View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8982_high_3 (Length: 518)
Name: NF8982_high_3
Description: NF8982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8982_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 27240751 - 27241249
Alignment:
| Q |
1 |
atacccacatctttccccgcctcgacggcacaaccttaatcgtcttatcctctgtatgttcagaactccgtcacatgatttgccacaacaacgaagatct |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27240751 |
atacccacatccttccccgcctcgacggcacaaccttaatcgtcttattctctgtatgttcagaactccgtcacatgatttgccacaacaacgaagatct |
27240850 |
T |
|
| Q |
101 |
atggcggaacatatgtacctcaaagtggccttctttactgaaggatcctattgttcacaacgtcatctccactttccccggtggttaccgttccttcttc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
27240851 |
atggcggaacatatgcacctcaaagtggccttctttactgaaggatcctattgttcacaacgtcatctccactttccctggtggttaccgttcctttttc |
27240950 |
T |
|
| Q |
201 |
tccgacgcattcccttccctgcaccatcttaataattctcattgttcctatcctcttacgatagatttaatacatgctgttgatatctatattcatggag |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27240951 |
tccgacgcattcccttccctgcaccatcttaataattctcattgttcctatcctcttacgatagatttaatacatgctgttgatatctatattcatggag |
27241050 |
T |
|
| Q |
301 |
aatatttgacttcaagcgttcgagttcaaagcttaaacacagactgtctttcttcttcggatttatttcatctgacgtttgatgatttgaatatgagtca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27241051 |
aatatttgacttcaagcgttcgagttcaaagcttaaacacagactgtctttcttcttcggatttatttcatctgacgtttgatgatttgaatatgagtca |
27241150 |
T |
|
| Q |
401 |
cattcataccaaggagtggaaggaagaagatgtgttcaagaatctttggactcttctgaagttgagttggattgttatagatccaattcgtaagcgtgc |
499 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27241151 |
tattcataccaaggagtggaaggaagaagatgtgttaaagaatctttggactcttctgaagttgagttggattgttatagatccaattcgtaagcgtgc |
27241249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27257353 - 27257572
Alignment:
| Q |
1 |
atacccacatctttccccgcctcgacggcacaaccttaatcgtcttatcctctgtatgttcagaactccgtcacatgatttgccacaacaacgaagatct |
100 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
27257353 |
atacccacatccttccccgtctcgacggcacaaccttaaccgtcttatcctctgtgtgttcagaacttcgtcacatgatttgccacagcaacgaagatct |
27257452 |
T |
|
| Q |
101 |
atggcggaacatatgtacctcaaagtggccttctttactgaaggatcctattgttcacaacgtcatctccactttccccggtggttaccgttccttcttc |
200 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||| ||| ||||||||| ||||||||||| ||||| |||||||| || |||||||||||||||||| |
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| T |
27257453 |
atggcggaacatatgcacctcaacgtggccttctttgctgttggatcctatcgttcacaacgttatctctactttccctggaggttaccgttccttcttc |
27257552 |
T |
|
| Q |
201 |
tccgacgcattcccttccct |
220 |
Q |
| |
|
|| ||||| ||||||||||| |
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|
| T |
27257553 |
tcggacgccttcccttccct |
27257572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 206 - 408
Target Start/End: Original strand, 27248586 - 27248791
Alignment:
| Q |
206 |
cgcattcccttccctgcaccatcttaataattctcattgttcctatcctcttacgatagatttaatacatgctgttgatatctatattcatggagaatat |
305 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||| | |
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| T |
27248586 |
cgcattcccttcactgcaccatcttaataattctcattgttcctatcctcctaggatagatttaatacatgccgttgatatctatattcatagagaacct |
27248685 |
T |
|
| Q |
306 |
ttgacttcaagcgttcgagttcaaagcttaaacacagactg---tctttcttcttcggatttatttcatctgacgtttgatgatttgaatatgagtcaca |
402 |
Q |
| |
|
|| | |||||| ||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| || |
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| T |
27248686 |
tttatttcaagagttcgagttcaaagcttaatcacaaactggactctttcttcttcggatttatttcatctgacgttcgatgatttgtatatgggtcgca |
27248785 |
T |
|
| Q |
403 |
ttcata |
408 |
Q |
| |
|
|||||| |
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|
| T |
27248786 |
ttcata |
27248791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 27253066 - 27253262
Alignment:
| Q |
4 |
cccacatctttccccgcctcgacggcacaaccttaatcgtcttatcctctgtatgttcagaactccgtcacatgatttgccacaacaacgaagatctatg |
103 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||||| | | ||||||| ||||| |||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
27253066 |
cccacatcctgccccgcctcgatggcacaaccttaaccatattatcctgtgtatcttcagaactccgccacatgatctgc---aacaacgaagatctatg |
27253162 |
T |
|
| Q |
104 |
gcggaacatatgtacctcaaagtggccttctttactgaaggatcctattgttcacaacgtcatctccactttccccggtggttaccgttccttcttctcc |
203 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| || |||||| || | | ||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
27253163 |
gcggaacatatgcacttcaacatggccttctttgctattggatcccatagctaacaacgtcatctccacttttcccggtggttaccgttccttcttctcc |
27253262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 27246286 - 27246482
Alignment:
| Q |
4 |
cccacatctttccccgcctcgacggcacaaccttaatcgtcttatcctctgtatgttcagaactccgtcacatgatttgccacaacaacgaagatctatg |
103 |
Q |
| |
|
|||||||| | ||||||||||| || |||||||||| || ||| ||||| |||| |||||||||||| |||||||| ||| || |||| |||| |||| |
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| T |
27246286 |
cccacatcctgccccgcctcgatggaacaaccttaaccgccttctcctccgtatcttcagaactccgccacatgatctgcaacgacaa---agatttatg |
27246382 |
T |
|
| Q |
104 |
gcggaacatatgtacctcaaagtggccttctttactgaaggatcctattgttcacaacgtcatctccactttccccggtggttaccgttccttcttctcc |
203 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| || |||||| || | | |||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
27246383 |
gcggaacatatgcacctcaacatggccttctttgctattggatcccatagctaacaacgtcatctccactttccctggtggttaccattccttcttctcc |
27246482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 499
Target Start/End: Original strand, 27248832 - 27248870
Alignment:
| Q |
461 |
gttgagttggattgttatagatccaattcgtaagcgtgc |
499 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
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|
| T |
27248832 |
gttgagttggattgttatagatccaactcgtaagcgtgc |
27248870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 61 - 255
Target Start/End: Complemental strand, 7502157 - 7501966
Alignment:
| Q |
61 |
cagaactccgtcacatgatttgccacaacaacgaagatctatggcggaacatatgtacctcaaagtggccttctttactgaaggatcctattgttcacaa |
160 |
Q |
| |
|
|||||||||| ||| |||| ||| |||||||| | ||||||||||||| || || ||||||||||||||||| || | |||||| || ||| || | |
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|
| T |
7502157 |
cagaactccgccacctgatctgcaacaacaacaacaatctatggcggaatatttgcacctcaaagtggccttcc---cttatggatccaatcgttaacga |
7502061 |
T |
|
| Q |
161 |
cgtcatctccactttccccggtggttaccgttccttcttctccgacgcattcccttccctgcaccatcttaataattctcattgttcctatcctc |
255 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||||| ||||||| || ||||||||| |||||||||||| |
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|
| T |
7502060 |
tgtcatctccactttccccggtggttacagttcattcttctccgatgcgttcccttcccttcaccatcatactaattctcaccgttcctatcctc |
7501966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 7500619 - 7500561
Alignment:
| Q |
169 |
ccactttccccggtggttaccgttccttcttctccgacgcattcccttccctgcaccat |
227 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || |||||| | |||||| |
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|
| T |
7500619 |
ccactttccctggtggttaccgttccttcttctccgacgcgtttccttccattcaccat |
7500561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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