View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8982_low_10 (Length: 225)
Name: NF8982_low_10
Description: NF8982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8982_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 2046709 - 2046900
Alignment:
| Q |
15 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2046709 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagatttaggtttgcatcca |
2046808 |
T |
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| Q |
115 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
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| T |
2046809 |
aatcatctaaaagatatggattgtactcaagggttatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
2046900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 2029335 - 2029524
Alignment:
| Q |
17 |
attcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaa |
116 |
Q |
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||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||| || |||||||||||||| ||||||| |
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| T |
2029335 |
attcttgcagagatatactactagaatatgggaaacaggtgatgaatctaggaactttgctgtttgaattgttgtcacaagctttaggtttgaatccaaa |
2029434 |
T |
|
| Q |
117 |
tcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
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| T |
2029435 |
ccatctaaaagatatgggttgtgccgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
2029524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 2037462 - 2037647
Alignment:
| Q |
21 |
ttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcat |
120 |
Q |
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||||||||||||| | |||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||| |||||||||||| || ||||||| ||| |
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| T |
2037462 |
ttgcagagatatacttctagaatatggaaaacacatgacaaatctagggaccttactgttttaattgttatcagaagctttaggtctgaatccaaaccat |
2037561 |
T |
|
| Q |
121 |
ctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
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|||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
2037562 |
ctaaaagatatggattgtgctaaaggactatttgctctttgccattattatccttcttgtccggaaccagaattgactgtgggaac |
2037647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 2050624 - 2050815
Alignment:
| Q |
15 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
114 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||||| ||||||||||||| |||||| | ||||||||| | || ||||||||||| || ||||| |
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| T |
2050624 |
ttattcttacagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactatttgaattgatgtcagaagctttaggactgaatcca |
2050723 |
T |
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| Q |
115 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
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|| |||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2050724 |
aaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaac |
2050815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 2057860 - 2058048
Alignment:
| Q |
18 |
ttcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaat |
117 |
Q |
| |
|
||||||||||||| | |||||| ||||||| ||||| ||||||||||||| |||||| ||||||||||||| || ||||||||||||||| ||||||| |
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| T |
2057860 |
ttcttgcagagatgtgatactataatatgggaaacaagtgatgaatctaggaactttactgtttgaattgttgtcagaagctttaggtttgaatccaaac |
2057959 |
T |
|
| Q |
118 |
catctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
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|||||||||||||||| |||| || |||||||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
2057960 |
catctaaaagatatgggttgtgctgaagggctaattgctctttgtcattattatccttcttatcccgaaccagaattgactgtgggaac |
2058048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 2033892 - 2034083
Alignment:
| Q |
15 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
114 |
Q |
| |
|
||||||||||||||||||| | || ||||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| ||||| |
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| T |
2033892 |
ttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatcca |
2033991 |
T |
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| Q |
115 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
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|| ||| | ||||||||||||||| || ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
2033992 |
aaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtaggaac |
2034083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 2055039 - 2055224
Alignment:
| Q |
21 |
ttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcat |
120 |
Q |
| |
|
||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| ||||||| ||| |
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| T |
2055039 |
ttgcagagatatactgctacgatatgggaaacacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccat |
2055138 |
T |
|
| Q |
121 |
ctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
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| ||||||||||||||| || ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
2055139 |
ttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaac |
2055224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 1948822 - 1948631
Alignment:
| Q |
15 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
114 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||| | ||||||||||| || || ||||| ||||||||| | ||| |
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| T |
1948822 |
ttattcttacagagatataaccctagaatatgggaaacacgtgatgaatctagggactatgttgtttgaatttttgtcagaagcattaggtttgaaacca |
1948723 |
T |
|
| Q |
115 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
1948722 |
aaccatctaaaagatatgggttgtactgaagggctgattgctgtttgccattattatccttcttgtcctgaaccagaactgactatgggaac |
1948631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 10768363 - 10768548
Alignment:
| Q |
21 |
ttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcat |
120 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| || ||||||||||||||||||||| | | || |||||||||||| || ||||||| ||| |
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| T |
10768363 |
ttgcagagatatattgctagaatatggaaaacacatgagaaacctagggactttattgtttgaactatgctcagaagctttaggtctgaatccaaaccat |
10768462 |
T |
|
| Q |
121 |
ctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
206 |
Q |
| |
|
||||||||||| |||||| || |||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10768463 |
ctaaaagatattgattgtgctgaaggattacttgctctcggtcattattatcctccttgtcctgaaccagaattgactgtgggaac |
10768548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 48907118 - 48906929
Alignment:
| Q |
15 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatcca |
114 |
Q |
| |
|
||||||||||||||| ||| | |||||||| | ||||| |||||||| || || |||| | ||||||||| | || |||||||||||| || ||||| |
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| T |
48907118 |
ttattcttgcagagacatactgatagaatatagtaaacaaatgatgaacctgggatttttactatttgaattgctgtcagaagctttaggtctgaatcca |
48907019 |
T |
|
| Q |
115 |
aatcatctaaaagatatggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtggga |
204 |
Q |
| |
|
|| |||||||||||||||| |||| | |||||||| ||||| |||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
48907018 |
aaccatctaaaagatatgggttgtgttgaagggctaattgctgcttgccattattatcctccatgccctgaaccagatttgactgtggga |
48906929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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