View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8982_low_11 (Length: 208)
Name: NF8982_low_11
Description: NF8982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8982_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 2046725 - 2046900
Alignment:
| Q |
14 |
ataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagata |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2046725 |
ataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagatttaggtttgcatccaaatcatctaaaagata |
2046824 |
T |
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| Q |
114 |
tggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2046825 |
tggattgtactcaagggttatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
2046900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 2037478 - 2037647
Alignment:
| Q |
20 |
ctagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatatggatt |
119 |
Q |
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|||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||| |||||||||||| || ||||||| ||||||||||||||||||| |
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| T |
2037478 |
ctagaatatggaaaacacatgacaaatctagggaccttactgttttaattgttatcagaagctttaggtctgaatccaaaccatctaaaagatatggatt |
2037577 |
T |
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| Q |
120 |
gtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
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| T |
2037578 |
gtgctaaaggactatttgctctttgccattattatccttcttgtccggaaccagaattgactgtgggaac |
2037647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2029353 - 2029524
Alignment:
| Q |
18 |
tactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatatgga |
117 |
Q |
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| T |
2029353 |
tactagaatatgggaaacaggtgatgaatctaggaactttgctgtttgaattgttgtcacaagctttaggtttgaatccaaaccatctaaaagatatggg |
2029452 |
T |
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| Q |
118 |
ttgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
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|||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2029453 |
ttgtgccgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
2029524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 2050641 - 2050815
Alignment:
| Q |
15 |
taatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatat |
114 |
Q |
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|||||||||||||||| ||||| ||||||||||||| |||||| | ||||||||| | || ||||||||||| || ||||||| |||||||||||||| |
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| T |
2050641 |
taatactagaatatgggaaacaggtgatgaatctaggaactttactatttgaattgatgtcagaagctttaggactgaatccaaaccatctaaaagatat |
2050740 |
T |
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| Q |
115 |
ggattgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
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|| |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2050741 |
gggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaac |
2050815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 2055060 - 2055224
Alignment:
| Q |
25 |
atatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatatggattgtact |
124 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| ||||||| ||| | ||||||||||||||| || |
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| T |
2055060 |
atatgggaaacacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccatttgaaagatatggattgtgct |
2055159 |
T |
|
| Q |
125 |
caagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
| |
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||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
2055160 |
gaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaac |
2055224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 2057876 - 2058048
Alignment:
| Q |
17 |
atactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatatgg |
116 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||| |||||| ||||||||||||| || ||||||||||||||| ||||||| |||||||||||||||| |
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| T |
2057876 |
atactataatatgggaaacaagtgatgaatctaggaactttactgtttgaattgttgtcagaagctttaggtttgaatccaaaccatctaaaagatatgg |
2057975 |
T |
|
| Q |
117 |
attgtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
| |
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|||| || |||||||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
2057976 |
gttgtgctgaagggctaattgctctttgtcattattatccttcttatcccgaaccagaattgactgtgggaac |
2058048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 2033918 - 2034083
Alignment:
| Q |
24 |
aatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatatggattgtac |
123 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| ||||||| ||| | ||||||||||||||| | |
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| T |
2033918 |
aatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccatttgaaagatatggattgtgc |
2034017 |
T |
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| Q |
124 |
tcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
| |
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| T |
2034018 |
tgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtaggaac |
2034083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 1948800 - 1948631
Alignment:
| Q |
20 |
ctagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatatggatt |
119 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| | ||||||||||| || || ||||| ||||||||| | ||||| |||||||||||||||| || |
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| T |
1948800 |
ctagaatatgggaaacacgtgatgaatctagggactatgttgtttgaatttttgtcagaagcattaggtttgaaaccaaaccatctaaaagatatgggtt |
1948701 |
T |
|
| Q |
120 |
gtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
1948700 |
gtactgaagggctgattgctgtttgccattattatccttcttgtcctgaaccagaactgactatgggaac |
1948631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 10768379 - 10768548
Alignment:
| Q |
20 |
ctagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatatggatt |
119 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||| | | || |||||||||||| || ||||||| |||||||||||||| |||| |
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| T |
10768379 |
ctagaatatggaaaacacatgagaaacctagggactttattgtttgaactatgctcagaagctttaggtctgaatccaaaccatctaaaagatattgatt |
10768478 |
T |
|
| Q |
120 |
gtactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaac |
189 |
Q |
| |
|
|| || |||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10768479 |
gtgctgaaggattacttgctctcggtcattattatcctccttgtcctgaaccagaattgactgtgggaac |
10768548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 48907095 - 48906929
Alignment:
| Q |
21 |
tagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagctttaggtttgcatccaaatcatctaaaagatatggattg |
120 |
Q |
| |
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|||||||| | ||||| |||||||| || || |||| | ||||||||| | || |||||||||||| || ||||||| |||||||||||||||| ||| |
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| T |
48907095 |
tagaatatagtaaacaaatgatgaacctgggatttttactatttgaattgctgtcagaagctttaggtctgaatccaaaccatctaaaagatatgggttg |
48906996 |
T |
|
| Q |
121 |
tactcaagggctatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtggga |
187 |
Q |
| |
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| | |||||||| ||||| |||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
48906995 |
tgttgaagggctaattgctgcttgccattattatcctccatgccctgaaccagatttgactgtggga |
48906929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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