View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8982_low_2 (Length: 572)
Name: NF8982_low_2
Description: NF8982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8982_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 322 - 556
Target Start/End: Complemental strand, 10311777 - 10311545
Alignment:
| Q |
322 |
atccaatggagaatggaataaaattgaataaaagaaaaagttgcttaaaacctatatattaatttggtggggnnnnnnngtggagtattatatgcaattt |
421 |
Q |
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| T |
10311777 |
atccaatggagaatggaataaaattgaataaaagaaaaagttgattaaaacctatatattaatttggtggggaaaaaaagtggagtattatatgcaattt |
10311678 |
T |
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| Q |
422 |
tatgtcatcataccttcgattaatagaatcgattgtgatttgactgcattccatatttttccataaatttgagtgtgtgacattttggaaactccattta |
521 |
Q |
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| T |
10311677 |
tatgtcatcataccttcgattaatagaatcgactgtgatttgattgcattccatatttttccataaatttgag--tgtgacattttggaaactccattta |
10311580 |
T |
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| Q |
522 |
aggttagcacaatttgagtactaagtgaagtttct |
556 |
Q |
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| T |
10311579 |
aggttagcacaatttgagtactaagtgaagtttct |
10311545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 10312004 - 10311880
Alignment:
| Q |
13 |
agcagagagatatgaggaagaaggtggatgagcgaatcagaactctcattgagaatggcattaaaacaaggcataggtccatgtttgtcatcattggtga |
112 |
Q |
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| T |
10312004 |
agcagagagatatgaggaagaaggtggatgagcgaatcagaactctcattgagaatggcgttaaaacaaggcataggtccatgtttgtcatcattggtga |
10311905 |
T |
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| Q |
113 |
caagtactatgaccaggtataacta |
137 |
Q |
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| T |
10311904 |
caagtactatgaccaggtataacta |
10311880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 10311849 - 10311778
Alignment:
| Q |
196 |
agtataggttggttgtgttctagaagctcatcagggccatgttagaccttaatactcaaagacagttgaacc |
267 |
Q |
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| T |
10311849 |
agtataggttggttgtgttctagaagctcatcagggtcatgttagacctcaatgctcaaagacagttgaacc |
10311778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 38436333 - 38436242
Alignment:
| Q |
24 |
atgaggaagaaggtggatgagcgaatcagaactctcattgagaatggcattaaaacaaggcataggtccatgtttgtcatcattggtgacaa |
115 |
Q |
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| T |
38436333 |
atgaggaagaaggtggatgaacgtatcagaactcttatcgaaaatggcgtcaaatcaaggcatcgatccatgtttgtcattatcggtgacaa |
38436242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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