View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8982_low_3 (Length: 542)

Name: NF8982_low_3
Description: NF8982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8982_low_3
NF8982_low_3
[»] chr6 (4 HSPs)
chr6 (1-525)||(17367232-17367746)
chr6 (121-305)||(17361141-17361319)
chr6 (79-164)||(19118268-19118353)
chr6 (85-164)||(19125577-19125656)
[»] chr3 (4 HSPs)
chr3 (85-164)||(23226409-23226488)
chr3 (85-152)||(23231740-23231807)
chr3 (85-152)||(23235632-23235699)
chr3 (110-168)||(13478842-13478900)
[»] chr2 (2 HSPs)
chr2 (439-490)||(9494789-9494839)
chr2 (74-167)||(33037398-33037491)
[»] chr5 (1 HSPs)
chr5 (451-493)||(3448896-3448938)
[»] chr4 (1 HSPs)
chr4 (120-176)||(20020571-20020627)


Alignment Details
Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 17367746 - 17367232
Alignment:
Q  1 cttaagcttatctcataatttgtgtaggttacgacgaggtggtggcgatgcatggttgacatgctgtgttttctagcaaatttaggatcagaaattaggt 100  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17367746 cttaagcttatgtcataatctgtgtaggttacgacgaggtggtggcgatgcatggttgacatgctgtgttttctagcaaatttaggatcagaaattaggt 17367647  T
Q  101 cattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaagcctacacagaatttcttccatgagttccatcggaagagagggaagcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17367646 cattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaagcctacacagaatttcttccatgagttccatcggaagagagggaagcga 17367547  T
Q  201 tggtgggtcggaagagacaaagagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgatgaaggtgacccatgtttgtttcatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17367546 tggtgggtcggaagagacaaagagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgataaaggtgacccatgtttgtttcatc 17367447  T
Q  301 attgatagctaacaataaaaatcaacgatagctaataaaataataatgtaaattaaaacacacaactgaacgtggtgaagcagcctattttatgaagaga 400  Q
    ||||||||||||||| |||          |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17367446 attgatagctaacaacaaa----------agctaacaaaataataatgtaaattaaaacacacaactgaacgtggtgaagcagcctattttatgaagaga 17367357  T
Q  401 gcatgtatccaaatattaggaatacgaaacacacaactgaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaatattcttctat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17367356 gcatgtatccaaatattaggaatacgaaacacacaactgaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaatattcttctgt 17367257  T
Q  501 tacgtgtttgttttatcatcgtaac 525  Q
    |||||||||||||||||||||||||    
T  17367256 tacgtgtttgttttatcatcgtaac 17367232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 121 - 305
Target Start/End: Complemental strand, 17361319 - 17361141
Alignment:
Q  121 catcgaagttgtatgaggagcttgacgggaagcctacacagaatttcttccatgagttccatcggaagagagggaagcgatggtgggtcggaagagacaa 220  Q
    ||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||| |||||||| || || ||      |||||| ||||| |||||||    
T  17361319 catcgaagttgaaagaggagcttgactggaagcctacacagaatttcttccacgagatccatcgggagcgatgg------tggtggttcggaggagacaa 17361226  T
Q  221 agagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgatgaaggtgacccatgtttgtttcatcattga 305  Q
    ||||||||||||||||||  |||||||||||||| ||||| || |||||||||||||||||| || |||||||||||||||||||    
T  17361225 agagtgattttagggttatgatgaaggtgaaaaatagtgacttgaggattctgatgaaggtggccaatgtttgtttcatcattga 17361141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 19118353 - 19118268
Alignment:
Q  79 aatttaggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaagcctacacagaat 164  Q
    ||||| ||||| |||||||||  |||||  |||||||||  |||||||||||||||||||||||| ||||||||||| ||||||||    
T  19118353 aatttgggatcggaaattagggtattgagggacttactttgacatcgaagttgtatgaggagcttcacgggaagcctgcacagaat 19118268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 19125656 - 19125577
Alignment:
Q  85 ggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaagcctacacagaat 164  Q
    |||||||||||||||  |||||  ||||||||   |||||||||||||| ||||||||| ||||||||||| ||||||||    
T  19125656 ggatcagaaattagggtattgagggacttactctgacatcgaagttgtacgaggagcttcacgggaagcctgcacagaat 19125577  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 23226409 - 23226488
Alignment:
Q  85 ggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaagcctacacagaat 164  Q
    |||||||||||||||  ||| || |||| ||| | |||||||||||||| ||||| ||||||||| |||||||| |||||    
T  23226409 ggatcagaaattaggatattcaaggactaactgagacatcgaagttgtaagaggatcttgacggggagcctacatagaat 23226488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 23231740 - 23231807
Alignment:
Q  85 ggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaag 152  Q
    |||||||| ||||||  |||||| |||||||| | |||||||||||||| |||||||||||| |||||    
T  23231740 ggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaag 23231807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 23235632 - 23235699
Alignment:
Q  85 ggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaag 152  Q
    ||||||||||| |||| |||||| |||||||| |  ||||||||||||| |||||||||||| |||||    
T  23235632 ggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaag 23235699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 13478900 - 13478842
Alignment:
Q  110 acttacttaaacatcgaagttgtatgaggagcttgacgggaagcctacacagaatttct 168  Q
    ||||||| | |||||||||||| | ||||||||| ||||| |||||||| |||||||||    
T  13478900 acttactgacacatcgaagttgaaggaggagcttcacgggtagcctacatagaatttct 13478842  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 9494789 - 9494839
Alignment:
Q  439 gaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaat 490  Q
    ||||||| |||||||||| ||  |||||||||||||||||||||||||||||    
T  9494789 gaacatggtgatttccatccag-tcaaagtttatatttttccatctttaaat 9494839  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 33037491 - 33037398
Alignment:
Q  74 tagcaaatttaggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaagcctacacagaatttc 167  Q
    |||| |||||||||||||||||||    ||||| ||||||||  | |||||||||||| |||||||| || || ||||| || || ||||||||    
T  33037491 tagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttc 33037398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 493
Target Start/End: Original strand, 3448896 - 3448938
Alignment:
Q  451 ttccatgcaaatcaaagtttatatttttccatctttaaatatt 493  Q
    |||||| ||| |||||| |||||||||||||||||||||||||    
T  3448896 ttccatccaagtcaaagcttatatttttccatctttaaatatt 3448938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 20020571 - 20020627
Alignment:
Q  120 acatcgaagttgtatgaggagcttgacgggaagcctacacagaatttcttccatgag 176  Q
    |||||||||||| | ||||||||| || || | |||||||||||||||||| |||||    
T  20020571 acatcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaatgag 20020627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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