View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8982_low_7 (Length: 456)
Name: NF8982_low_7
Description: NF8982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8982_low_7 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] scaffold1178 (2 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 61 - 456
Target Start/End: Complemental strand, 37178047 - 37177652
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcatttacttat |
160 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37178047 |
tgttaaatgataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcattcacttat |
37177948 |
T |
|
| Q |
161 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattactgccaatctataattttcacgt |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
37177947 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaaggcactacaatgaaaagaaacattactttcaatctataactttcacgt |
37177848 |
T |
|
| Q |
261 |
ttt-tgctccttttattcctctttctccaacagttttggtatcagagcagcctggtttatttaaatatnnnnnnngaaaaggaatggcaacgtcaaattc |
359 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
37177847 |
tttctgttccttttattcctctttctccaacagttttggtaccagagcagcctggtttattcaaa-aaataaaaaaaaaaggaatggcaacgtcaaattc |
37177749 |
T |
|
| Q |
360 |
aaattcaatcttctcttacacaacaaatcaaattccaattttcaatggtgaacactatgattactggaattctcaaatggaaactatatttatctct |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37177748 |
aaattcaatcttctcttacacaacaaatcaaattccagttttcaattgtgaacactatgattactggaattctcaaatggaaactatatttatctct |
37177652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 61 - 456
Target Start/End: Complemental strand, 32854908 - 32854517
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcatttacttat |
160 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32854908 |
tgttaaatgataatttgaaattttccatattcctaggttccttaatgtatcagtaagtttcagagaatgtcatttaatattcctaggtgcattcacttat |
32854809 |
T |
|
| Q |
161 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattactgccaatctataattttcacgt |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| | |
|
|
| T |
32854808 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaaggcactgcaatgaaaagaaacattactgtcaatctataactttcacat |
32854709 |
T |
|
| Q |
261 |
ttt-tgctccttttattcctctttctccaacagttttggtatcagagcagcctggtttatttaaatatnnnnnnngaaaaggaatggcaacgtcaaattc |
359 |
Q |
| |
|
||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
32854708 |
tttctgttccttttattcctctttatccaacagttttggtaccagagcagcctggtttatttataaa-----aaaaaaaaggaatggcaacgtcaaattc |
32854614 |
T |
|
| Q |
360 |
aaattcaatcttctcttacacaacaaatcaaattccaattttcaatggtgaacactatgattactggaattctcaaatggaaactatatttatctct |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32854613 |
aaattcaatcttctcttacacaacaaatcaaattccagttttcaatggtgaacactatgattactggaattctcaaatggaaactatatttatctct |
32854517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 61 - 291
Target Start/End: Complemental strand, 32850613 - 32850382
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcatttacttat |
160 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32850613 |
tgttaaatgataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcattcacttat |
32850514 |
T |
|
| Q |
161 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattactgccaatctataattttcacgt |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| | |
|
|
| T |
32850513 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaaggcactgcaatgaaaagaaacattactgtcaatctataactttcacat |
32850414 |
T |
|
| Q |
261 |
ttt-tgctccttttattcctctttctccaaca |
291 |
Q |
| |
|
||| || ||||||||||||||||||||||||| |
|
|
| T |
32850413 |
tttctgttccttttattcctctttctccaaca |
32850382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 61 - 291
Target Start/End: Complemental strand, 37173756 - 37173525
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcatttacttat |
160 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37173756 |
tgttaaatgataatttgtaatttttcatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcattcacttat |
37173657 |
T |
|
| Q |
161 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattactgccaatctataattttcacgt |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
37173656 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaaggcactacaatgaaaagaaacattactttcaatctataactttcacgt |
37173557 |
T |
|
| Q |
261 |
ttt-tgctccttttattcctctttctccaaca |
291 |
Q |
| |
|
||| || ||||||||||||||||||||||||| |
|
|
| T |
37173556 |
tttctgttccttttattcctctttctccaaca |
37173525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 61 - 293
Target Start/End: Complemental strand, 39163993 - 39163760
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcatttacttat |
160 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39163993 |
tgttaaatgataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcattcacttat |
39163894 |
T |
|
| Q |
161 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattactgccaatctataattttcacgt |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
39163893 |
ttactagaactttctatgtatcaatataactagaggttctatgtattgacaaggaactacaatgaaaagaaacattactttcaatctataactttcacgt |
39163794 |
T |
|
| Q |
261 |
ttt-tgctccttttattcctctttctccaacagt |
293 |
Q |
| |
|
||| || ||||||||||||||||||||||||||| |
|
|
| T |
39163793 |
tttctgttccttttattcctctttctccaacagt |
39163760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 53713210 - 53713167
Alignment:
| Q |
17 |
aatgaggtggtcttctggaaataatagaagtgatgtgaagcaat |
60 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
53713210 |
aatgaggtggtcttctcgaaataatcgaagtgatgtgaagcaat |
53713167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 60 - 291
Target Start/End: Complemental strand, 4479872 - 4479638
Alignment:
| Q |
60 |
ttgttaaatcataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcatttactta |
159 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4479872 |
ttgttaaatgataatttgtaattttccatattcctaggttccttaatgtatcagtaagttccagagaatgtcatttaatattcctaggtgcattcactta |
4479773 |
T |
|
| Q |
160 |
tttactagaactttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattactgccaa--tctataattttca |
257 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| | ||||| ||||| |
|
|
| T |
4479772 |
tttactagaactttttgtgtatcaatataactagaggttctatgtattgacaacgcactgcaataaaaagaaacattactttcaatttatataactttca |
4479673 |
T |
|
| Q |
258 |
cgtttt-tgctccttttattcctctttctccaaca |
291 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||| |
|
|
| T |
4479672 |
cattttctgttccttttattcctctttctccaaca |
4479638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 105 - 272
Target Start/End: Original strand, 14434531 - 14434698
Alignment:
| Q |
105 |
atgtatcagtaagttccagagaatgtcatttaatattcctaggtgcatttacttatttactagaactttctatgtatcaatataactagaggttctatgt |
204 |
Q |
| |
|
||||||| |||| || || | ||||||||| |||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14434531 |
atgtatctgtaaattacacaaaatgtcattaaatattcctaggtgcattcacgtatttactagaactttctatgcatcaatataactagaggttctatgt |
14434630 |
T |
|
| Q |
205 |
attgacaagttactgcaatgaaaagaaacattactgccaatctataattttcacgtttttgctccttt |
272 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| | |||| |||||||| || |||||| |
|
|
| T |
14434631 |
attgacaaggcactgcaatgaaaagaaacattgctgccaattcacaattatcacgtttctgttccttt |
14434698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 129 - 291
Target Start/End: Complemental strand, 20737903 - 20737740
Alignment:
| Q |
129 |
gtcatttaatattcctaggtgcatttacttatttactagaactttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaa |
228 |
Q |
| |
|
||||||||||||| || | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
20737903 |
gtcatttaatattactggatgcattcacttatttactagaactttctatgcatcaatataactagaggttctatgtattgaaatattattgcaatgaaaa |
20737804 |
T |
|
| Q |
229 |
gaaacattactgccaatctataattttcac-gtttttgctccttttattcctctttctccaaca |
291 |
Q |
| |
|
||||||||| ||||| | | ||||| |||| || | || ||||||| ||||||| |||||||| |
|
|
| T |
20737803 |
gaaacattattgccactttctaattctcacagtatatgttccttttcttcctctgactccaaca |
20737740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 14434467 - 14434517
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttccttaatgtatc |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14434467 |
tgttaaatgataatttgtaattttccatattcctaggttcattaatgtatc |
14434517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1178 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold1178
Description:
Target: scaffold1178; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 2267 - 2148
Alignment:
| Q |
105 |
atgtatcagtaagttccagagaatgtcatttaatattcctaggtgcatttacttatttactagaactttctatgtatcaatataactagaggttctatgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2267 |
atgtatcagtaagttccagagaatgtcatttaatattcctaggtgcattcacttatttactagaactttctatgcatcaatataactagaggttctatgt |
2168 |
T |
|
| Q |
205 |
attgacaagttactgcaatg |
224 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
2167 |
attgacaaggcactgcaatg |
2148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1178; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 2331 - 2286
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttccttaat |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2331 |
tgttaaatgataatttgtaattttccatattcctaggttccttaat |
2286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 424358 - 424287
Alignment:
| Q |
172 |
ttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattactgcca |
243 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
424358 |
ttctatgcatcaatataactagaggttctatgtattgacatggtactgcaatgaaaagaaacattactgcca |
424287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 18113360 - 18113293
Alignment:
| Q |
172 |
ttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattact |
239 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
18113360 |
ttctatgcttcaatataactagaggttttatgtattgacatggtactgcaatgaaaagatacattact |
18113293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 6154441 - 6154370
Alignment:
| Q |
172 |
ttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattactgcca |
243 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
6154441 |
ttctatgcatcaatataactagaggttctatgtattgacatggtactgcaatgaaaagaaacattactgcca |
6154370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 18414278 - 18414461
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttcc-ttaatgtatcagtaagttccagaga--atgtcatttaatattcctaggtgcatttact |
157 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||| || ||||||| ||||||| ||||| || ||||| |||||| |||| | |||| ||| |
|
|
| T |
18414278 |
tgttaaattataatttgcaatttttcatattcctaggttccattcatgtatctataagttctagagagtatatcattcaatatttctagattcattcact |
18414377 |
T |
|
| Q |
158 |
tatttactag---aactttctatgtatcaatataactagaggttctatgtattgacaagttactgcaatgaaaagaaacattac |
238 |
Q |
| |
|
|||||||||| || || |||| |||||||||| ||| |||||||||||||| | | | |||||||||||||||||||| |
|
|
| T |
18414378 |
tatttactagtagaaaattatatgcatcaatataaatagtagttctatgtattgaaagggcatagcaatgaaaagaaacattac |
18414461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 30782384 - 30782334
Alignment:
| Q |
61 |
tgttaaatcataatttgtaattttccatattcctaggttccttaatgtatc |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30782384 |
tgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc |
30782334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 13776 - 13733
Alignment:
| Q |
17 |
aatgaggtggtcttctggaaataatagaagtgatgtgaagcaat |
60 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13776 |
aatgaggtggtcttctgaaaataatagaagtgatgtgaagcaat |
13733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 15127812 - 15127886
Alignment:
| Q |
218 |
tgcaatgaaaagaaacattactgccaatctataattttcacgtttt-tgctccttttattcctctttctccaaca |
291 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| ||||||||| || || |||| ||||||| ||||||||| |
|
|
| T |
15127812 |
tgcaatgaaaagaaatattactgccaattcataattctcacgttttctgttcgttttcttcctctgtctccaaca |
15127886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University