View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8982_low_8 (Length: 325)
Name: NF8982_low_8
Description: NF8982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8982_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 85 - 309
Target Start/End: Complemental strand, 8892815 - 8892590
Alignment:
| Q |
85 |
aagacaagatggttataaagtacttaaagccacacattgtgcaatgtgacgagtatgggaaaccaccatttaggtt-agtacaagtgtttgatgcgcata |
183 |
Q |
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| T |
8892815 |
aagacaagatggttataaagtacttaaagccacacattgtgcaatgtgacgagtatgggaaaacaccatttaggtttagtacaagtgtttgatgcgcata |
8892716 |
T |
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| Q |
184 |
atatgcaagttttgtaaatttgggagtacaatttgattctttctaagaagtacaaaaattgtacataggaaacccacaattacatataattctacgtatg |
283 |
Q |
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| T |
8892715 |
atatgcaagttttgtaaatttgggagtacaatttgattctttctaagaagtacaaaaattgtacataggaaacccacaattacgtataattttacgtatg |
8892616 |
T |
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| Q |
284 |
atatttggatcttggacagttggaat |
309 |
Q |
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| T |
8892615 |
atatttggatcttggacagttggaat |
8892590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8892884 - 8892854
Alignment:
| Q |
1 |
agtacaaacaagtgtaagaaaaaatcttgaa |
31 |
Q |
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| T |
8892884 |
agtacaaacaagtgtaagaaaaaatcttgaa |
8892854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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