View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8982_low_9 (Length: 323)
Name: NF8982_low_9
Description: NF8982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8982_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 49532868 - 49533190
Alignment:
| Q |
1 |
gcaaaaaagagctggaccacattctgattctaactgggtcatgagggttgaacttggtgggaagaagaagactatagagtcagaagagataggatcaaaa |
100 |
Q |
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| T |
49532868 |
gcaaaaaagagctggaccacattctgattctaattgggtcatgagggttgaacttggtgggaagaagaagactatagagtcagaagagataggatcaaaa |
49532967 |
T |
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| Q |
101 |
caacacattattgatggcggtaataatagtaatgctgataatgaaaatagggtggtagtagaagaagaggaaagagttgctttgcagatgattgaagagt |
200 |
Q |
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| T |
49532968 |
caacacactattgatggtggtaataatagtaatgctgataatgaaaatagggtggtagtagaagaagaggaaagagttgctttgcagatgattgaagagt |
49533067 |
T |
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| Q |
201 |
tacttaattggaactatccatgtgaatcaacttcaagtaattaactctcagcaggaagaaaatagaaatatttcatgtcatggacatggttcttaaaaat |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49533068 |
tacttaattggaactatccatgtggatcaacttcaagtaattaactctcagcaggaagaaaatagaaatatttcatgtcatggacatggttcttaaaaat |
49533167 |
T |
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| Q |
301 |
gtagcaactccatgcatgccatt |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
49533168 |
gtagcaactccatgcatgccatt |
49533190 |
T |
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