View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_high_1 (Length: 849)
Name: NF8983_high_1
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 9463753 - 9463241
Alignment:
| Q |
1 |
agagagtaattgatttatggggaccaaatggtagtcaaccttcagaagcagaatataaagaggaaatggaaaaaattagaaaagctattgttgattttca |
100 |
Q |
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| T |
9463753 |
agagagtagttgatttatggggaccaaatggtagtcaaccttcagaagcagaatataaggaggaaatggaaaaaattagaaaagctattgttgattttca |
9463654 |
T |
|
| Q |
101 |
tggtgaaatggttctcttagttaactacagcaacattaactatacaggtacaattttttgactt--aaaaatttcccaaatatacatgagagttcaattt |
198 |
Q |
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| T |
9463653 |
tggtgaaatggttctcttagtaaactatagcaacattaactatacaggtaccattatttgactttaaagagtttcccaaatgtacatgagagtacaattt |
9463554 |
T |
|
| Q |
199 |
ctagttcaatcttatcacgactaattggtcccgaaatacataatttttgaaagggaaatgcttgttctcacgaaaaacttttcacggatacatcatgata |
298 |
Q |
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| T |
9463553 |
ctagttcaattttatcgggactaattggtcccgaaatacataatttttgaaagggaaatacttgttctcacgaaaaacttttcacggatacat-atgata |
9463455 |
T |
|
| Q |
299 |
ctgttgtgga-ccttatcatttacttcaacttacgcatgttttccggtaaaacaagatccaatgcacatcgtttagtcatgatggttttgtgaaaacagt |
397 |
Q |
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| T |
9463454 |
ctgtagtggatgtttttcatttacttcaac-----catgttttccaataaaacaagatccaacgcacatagttgattcactatggattcgtgaaaatagt |
9463360 |
T |
|
| Q |
398 |
ttttgctttaaatagcattgctcttttcgaaatgatcgataaaattaaaacctatcgatcattttggtacttttggtcagacatatcggtacgtttggtt |
497 |
Q |
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| T |
9463359 |
ttttggtttaaatagcatcgctcttttcgaaatgatcgataaaattaaaacctctcgatcattttagtatttttggtcgttcatattagtacttttggtt |
9463260 |
T |
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| Q |
498 |
agacttgtataattttcta |
516 |
Q |
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| T |
9463259 |
agactcctataattttcta |
9463241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 642 - 831
Target Start/End: Complemental strand, 9463224 - 9463034
Alignment:
| Q |
642 |
tattcaattcaaaatcactattatcaagcaatcaccaaaacacattgannnnnnn-gtagggttggctaaaattttgaaaaagtacgacaagaggacagg |
740 |
Q |
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| T |
9463224 |
tattcaattcaaaatcatgtgtatcaagcaatcaccaaaacacattgattttttttgtagggttggctaaaattttgaaaaagtatgacaagaggacagg |
9463125 |
T |
|
| Q |
741 |
aggtctacttcgtttaccattcattcaaaaagtattggagcaaccctttttcacaaccgatttaatatcgaaactcgtgaaggaatgtgaa |
831 |
Q |
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| T |
9463124 |
aggtctacttcgtttaccattcattcaaaaagtattggagcaaccctttttcacaaccgatttaatatcgaaactcgtgaaggaatgtgaa |
9463034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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