View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_high_12 (Length: 260)
Name: NF8983_high_12
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_high_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 3374011 - 3373766
Alignment:
| Q |
14 |
cagagagatagcctggcatttgagctcctgcggacacatggcttcaaagtgtcaccatgtatgatctttaagcgttattattttttaattaaaagattct |
113 |
Q |
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| T |
3374011 |
cagaaagatagtctggcatttgagctcctgcggacacatggcttcaaagtgtcaccatgtatgatctttaagcgttattattttttaattaaaagattct |
3373912 |
T |
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| Q |
114 |
gtaaatcccaaaactaaaaatttttggacaagaaaatgtaacgtgtcactaaattttcttcttacatcttaggtaaaataagtttatatacttacttttt |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
3373911 |
gtaaatcccaaaactataaatttttggacaagaaaatgtaacgtgtcactaaattttcttcttacatcttaggtaaaataagcttatatacttact-ttt |
3373813 |
T |
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| Q |
214 |
tacggttgtaannnnnnnncttcgaacagtttagtgacttaaatttc |
260 |
Q |
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| T |
3373812 |
tacggttgtaattttttttcttcgagcagtttagtgactaaaatttc |
3373766 |
T |
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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 3347601 - 3347534
Alignment:
| Q |
14 |
cagagagatagcctggcatttgagctcctgcggacacatggcttcaaagtgtcaccatgtatgatctt |
81 |
Q |
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|||| |||||| ||||||||||||||||| |||||||||| || ||||| ||||||||||||||||| |
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| T |
3347601 |
cagaaagatagtctggcatttgagctccttaggacacatggatttaaagtatcaccatgtatgatctt |
3347534 |
T |
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