View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_high_3 (Length: 506)
Name: NF8983_high_3
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 15 - 487
Target Start/End: Original strand, 21936488 - 21936959
Alignment:
| Q |
15 |
agagacggtagcgaacacagaaagagtggttggaacatagtaagttcaagttgtcattgaaacaaaattattgcaatatcattacttccttacagtttac |
114 |
Q |
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| T |
21936488 |
agagacggtagcgaacacagaaagagtggttggaacatagtaagttcaagttgtcattgaaacaaaattactgcaatatcattacttccttacagtttac |
21936587 |
T |
|
| Q |
115 |
aaaatgattcaaaatgtatgtattatttgatttacgtttcataatttgtgtaatgcagtggttacatgtctccagagtacgcccttgatggacatttttc |
214 |
Q |
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| T |
21936588 |
aaaatgattcaaaatgtatgtattatttgatttac-tttcataatttgtgtaatgcagtggttacatgtctccagagtatgcccttgatggacatttttc |
21936686 |
T |
|
| Q |
215 |
agttaagtccgatgtttttagcttcggtgttgtggtactcgagattattagtggaaaaagaaacaccggattttatcaagtcgaacataaattgagtctt |
314 |
Q |
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| T |
21936687 |
agtgaagtccgatgtttttagcttcggtgttgtggtacttgagattattagtggaaaaagaaacaccggattttatcaagtcgaacatgaattgagtctt |
21936786 |
T |
|
| Q |
315 |
cttggatatgtaagtgtctcgagttctactaaaatgtctagcaacatactacgataaatgttcaatcactgtatctgatcactatgaaccgttgaatttc |
414 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21936787 |
cttggatatgtaagtgtctcgagttctactaagatgtctagcaacatactacgataaacgttcaatcactgtatctgatcactatgaaccgttgaatttc |
21936886 |
T |
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| Q |
415 |
atatgattttcaaccattttgaaaatagtatcaccacataaaaaatgagccccacatcagttagtgggcatac |
487 |
Q |
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| T |
21936887 |
atatgattttcaaccattttgaaaatagtatcaccacataaaaaatgaggcccacatcagttagcgggcatac |
21936959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 47627662 - 47627765
Alignment:
| Q |
170 |
cagtggttacatgtctccagagtacgcccttgatggacatttttcagttaagtccgatgtttttagcttcggtgttgtggtactcgagattattagtgga |
269 |
Q |
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|||||||||||||||||| || || || | ||||||| ||||||| ||||| ||||||||||| || || || |||| |||||||||||||||||| |
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| T |
47627662 |
cagtggttacatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtgga |
47627761 |
T |
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| Q |
270 |
aaaa |
273 |
Q |
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|||| |
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| T |
47627762 |
aaaa |
47627765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 20062462 - 20062349
Alignment:
| Q |
165 |
taatgcagtggttacatgtctccagagtacgcccttgatggacatttttcagttaagtccgatgtttttagcttcggtgttgtggtactcgagattatta |
264 |
Q |
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|||||||||||||| |||||||| || ||||| | | |||| |||||||| || || |||||||||||||| |||||| || |||| |||||| ||| |
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| T |
20062462 |
taatgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgttttgatacttgagattctta |
20062363 |
T |
|
| Q |
265 |
gtggaaaaagaaac |
278 |
Q |
| |
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||| | ||||||| |
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| T |
20062362 |
ctgggagaagaaac |
20062349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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