View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_low_11 (Length: 470)
Name: NF8983_low_11
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 287 - 464
Target Start/End: Complemental strand, 41703722 - 41703545
Alignment:
| Q |
287 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
386 |
Q |
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| T |
41703722 |
aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
41703623 |
T |
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| Q |
387 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatgtccatctcatt |
464 |
Q |
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| T |
41703622 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcatt |
41703545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 46 - 259
Target Start/End: Complemental strand, 41703927 - 41703717
Alignment:
| Q |
46 |
tgtattatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtcca |
145 |
Q |
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| T |
41703927 |
tgtattatactttcaaaactaagaactaacatgagttaattgttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttata----- |
41703833 |
T |
|
| Q |
146 |
tctaccttgg----ataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggca |
241 |
Q |
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| T |
41703832 |
--taccttggatatataatagttcaataatcctgcactgtctgcctacatgtttttcttttttgcaccagaccatattgtaagattatggagaaaaggca |
41703735 |
T |
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| Q |
242 |
atgaatcatcgaaagaag |
259 |
Q |
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| T |
41703734 |
atgaaccatcgaaagaag |
41703717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 51 - 364
Target Start/End: Original strand, 41467192 - 41467496
Alignment:
| Q |
51 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctac |
150 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| | || ||| |
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| T |
41467192 |
tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttatagcctatttac |
41467291 |
T |
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| Q |
151 |
cttggataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcat |
250 |
Q |
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| T |
41467292 |
cttagataatagttc---aatcctgcactgtctacctacatctttttcttttttgcatcagaccttattgtaagattatcgaga------catgaaccat |
41467382 |
T |
|
| Q |
251 |
cgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccag |
350 |
Q |
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|| | ||||||||||| |||||||||| | |||| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||| ||| |
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| T |
41467383 |
cggaggaagtagaagtcgaggtttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcag |
41467482 |
T |
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| Q |
351 |
tgccactgatgaac |
364 |
Q |
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||| ||||||||| |
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| T |
41467483 |
ggcccctgatgaac |
41467496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 41506883 - 41506970
Alignment:
| Q |
254 |
aagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg |
341 |
Q |
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|||||| ||||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||| ||||| ||| ||| |||||| |
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| T |
41506883 |
aagaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg |
41506970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
| Q |
287 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
349 |
Q |
| |
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|||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
41513161 |
aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41513223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 326
Target Start/End: Original strand, 41497620 - 41497706
Alignment:
| Q |
240 |
caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaa |
326 |
Q |
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|||||||||||| | |||| ||||||||||||||||| | |||| |||||||||||||||||||| ||| ||| ||||| ||||| |
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| T |
41497620 |
caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgactgtgttaaccgcatttgcaaa |
41497706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
| Q |
287 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
349 |
Q |
| |
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|||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
41522096 |
aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41522158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 41703975 - 41703940
Alignment:
| Q |
19 |
aaacaagaggtggaatatcacttgttatgtattata |
54 |
Q |
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| T |
41703975 |
aaacaagaggtggaatatcacttgttatgtattata |
41703940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 33077964 - 33078038
Alignment:
| Q |
240 |
caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaac |
314 |
Q |
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|||| |||||||| | || ||||||||||||||||||| | | || ||||| |||||||||||||| ||||||| |
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| T |
33077964 |
caataaatcatcggaggacgtagaagtggaggtttcactgtcggtgaaagaatattttcttttgactgtgtcaac |
33078038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 36467105 - 36467243
Alignment:
| Q |
51 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttatagtccatcta |
149 |
Q |
| |
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|||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||| |||| || |
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| T |
36467105 |
tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccattta |
36467204 |
T |
|
| Q |
150 |
ccttggataatagttcaataatcctgcactgtctgcctacat |
191 |
Q |
| |
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|||| |||| |||||| |||||||||||| |||||||||| |
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| T |
36467205 |
ccttagatattagttc---aatcctgcactgcctgcctacat |
36467243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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