View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_low_12 (Length: 456)
Name: NF8983_low_12
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_12 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 5977 - 5547
Alignment:
| Q |
11 |
cagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtggg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5977 |
cagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtggg |
5878 |
T |
|
| Q |
111 |
tgctgctccacgaagtgttggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcaaggtcggtggcggcggagaggctttcga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5877 |
tgctgctccacgaagtgttggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcgaggtcggtggcggcggagaggctttcga |
5778 |
T |
|
| Q |
211 |
cgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattgga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5777 |
cgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattgga |
5678 |
T |
|
| Q |
311 |
gggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5677 |
gggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaag |
5578 |
T |
|
| Q |
411 |
tagatagtaagtggtttctcttctccttctt |
441 |
Q |
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| T |
5577 |
tagatagtaagtgctttctcttctccttctt |
5547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 9961 - 9553
Alignment:
| Q |
11 |
cagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtggg |
110 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||| |
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| T |
9961 |
cagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtggg |
9862 |
T |
|
| Q |
111 |
tgctgctccacgaagtgttggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcaaggtcggtggcggcggagaggctttcga |
210 |
Q |
| |
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| T |
9861 |
tgctgctccacgaagtgttggatgggtggtcggaggagagtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagagagactttcta |
9762 |
T |
|
| Q |
211 |
cgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattgga |
310 |
Q |
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| || || |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
9761 |
caccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttgga |
9662 |
T |
|
| Q |
311 |
gggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaag |
410 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||| |||||| |||| |||||||||||||||||| | |||||||||||||||| |
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| T |
9661 |
aggtgtggttatgatggtaacattttgacagcgta----------------tatgtcgcatagagggatcatatgaccaggtgataagtaaggtatgaag |
9578 |
T |
|
| Q |
411 |
tagatagtaagtggtttctcttctc |
435 |
Q |
| |
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||||| |||||| ||||||||||| |
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| T |
9577 |
tagattttaagtgctttctcttctc |
9553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 897 - 812
Alignment:
| Q |
39 |
ggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtgggtgctgctccacgaa |
124 |
Q |
| |
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||||| |||||||||||||| || ||||| |||||||| || || |||||||| || |||||||| ||||| | ||| |||||||| |
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| T |
897 |
ggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaatccgctacgatgcaatcaggtggttcctgttccacgaa |
812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 48911811 - 48911381
Alignment:
| Q |
11 |
cagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtggg |
110 |
Q |
| |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||| ||||| |||||||| |||||| |
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| T |
48911811 |
cagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtggg |
48911712 |
T |
|
| Q |
111 |
tgctgctccacgaagtgttggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagattctcaaggtcggtggcggcggagaggctttcga |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| ||||||| ||| || |||| ||| || || || |||||||||| || | ||||| ||||| |
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| T |
48911711 |
tgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcga |
48911612 |
T |
|
| Q |
211 |
cgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattgga |
310 |
Q |
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||||||| |||||||| ||| | || |||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
48911611 |
cgccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattgga |
48911512 |
T |
|
| Q |
311 |
gggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggtatgaag |
410 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||| ||||||||| || ||||| |||||||||||||||||| |
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| T |
48911511 |
gggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaag |
48911412 |
T |
|
| Q |
411 |
tagatagtaagtggtttctcttctccttctt |
441 |
Q |
| |
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||||| ||||||| ||||||||||||||||| |
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| T |
48911411 |
tagatggtaagtgctttctcttctccttctt |
48911381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 48951954 - 48952063
Alignment:
| Q |
15 |
gagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtgggtgct |
114 |
Q |
| |
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|||||||||||||| || ||| ||||| || ||||| ||||| || |||||| |||| || || || ||||||||||| |||||||| |||||||||| |
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| T |
48951954 |
gagaaaccgttgaacacgaatctcggaatgtgcagcttctttgctagctcatcagcccacgggaataaaaaatccgccacgatgcaatcaggtgggtgct |
48952053 |
T |
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| Q |
115 |
gctccacgaa |
124 |
Q |
| |
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|||||||||| |
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| T |
48952054 |
gctccacgaa |
48952063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 391
Target Start/End: Original strand, 48975033 - 48975190
Alignment:
| Q |
234 |
tgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattggagggtgtggttatgatggtaactt |
333 |
Q |
| |
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||||||||||||||||| || |||| |||||||| | || |||||||||||||| || |||||| ||||| ||||| ||||| ||||||||||| | |
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|
| T |
48975033 |
tgggaaggaaatggaacagtatgaaggcggaggtggttgtgagaagggatggatttgagaatgatttgggcattagagggagtggtaatgatggtaacat |
48975132 |
T |
|
| Q |
334 |
tttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccagg |
391 |
Q |
| |
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|||| || | ||||||||||||| || ||||| |||| |||| |||| || ||||| |
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| T |
48975133 |
ggtgaccgcatgaggcaaagagtgtagcaatgtcgcatagaggggtcatgtggccagg |
48975190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 48952137 - 48952197
Alignment:
| Q |
198 |
gagaggctttcgacgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaa |
258 |
Q |
| |
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|||||| |||||| |||||| |||||||||||||| |||||||| ||| ||| ||| |||| |
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|
| T |
48952137 |
gagaggttttcgatgccatcggggaggccaacttcttgggaagggaattgaaaggtttgaa |
48952197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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