View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8983_low_14 (Length: 452)
Name: NF8983_low_14
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Complemental strand, 34436735 - 34436309
Alignment:
| Q |
10 |
cagagaggtacttgcggcacaattttgacagtgaataacatggcgcgaaacaacagcaggtcacaaaattgagcaacccccgccctgccttcaatcaatg |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34436735 |
cagacaggtacttgcggcacaattttgacagtgaataacatggcgtgaaacaacagcaggtcacaaaattgagcaacccccgccctgccttcaatcaatg |
34436636 |
T |
|
| Q |
110 |
cacagatgtctttaccggtaagggactcggtgcaaatttggtagatgggaaaatcgatcataaattgctagagtaaatcttttccaataaatgttttaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34436635 |
cacagatgtctttaccggtaagggactcggtgcaaatttggtagatgggaaaatcgatcataaattgctagagt-aatcttttccaataaatgttttaag |
34436537 |
T |
|
| Q |
210 |
ttcttccttagctgcttccatcacaacgttaaagtctatcttggtataccttcccctgcgatccacaatttaaatct--tttttagcaacttgcctagac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34436536 |
ttcttccttagctgcttccatcacaacgttaaagtctatcttggtataccttcccctgcgatccacaatttaaatctcagttttagcaacttgcctagac |
34436437 |
T |
|
| Q |
308 |
gaatgatataaaatatgtagacaaataacatccaataatacacattcaatgttaaacaaaagtaggactgnnnnnnntgaaacgaatggacattgctcac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34436436 |
gaatgatataaaatatgtagacaaataacatccaataatacacattcaatgttaaacaaaagtaggactg-aaaaaatgaaacgaatggacattgctcac |
34436338 |
T |
|
| Q |
408 |
tagagtttcttccttttgtttcacaaatc |
436 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34436337 |
tagagtttcttccttttgtttcacaaatc |
34436309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University