View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_low_16 (Length: 407)
Name: NF8983_low_16
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 12934232 - 12933848
Alignment:
| Q |
1 |
tgacaaccatagctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12934232 |
tgacaaccatagctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaat |
12934133 |
T |
|
| Q |
101 |
tccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12934132 |
tccttcttcaaatcaccaatcatatccttgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttt |
12934033 |
T |
|
| Q |
201 |
tgacatatacacaatgatctgcatctgtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatcc |
300 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
12934032 |
tgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatcc |
12933933 |
T |
|
| Q |
301 |
atacaagctcttcttcaatttgcaaaccaggtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12933932 |
atacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
12933848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 14177502 - 14177118
Alignment:
| Q |
1 |
tgacaaccatagctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
14177502 |
tgacaaccatagctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaat |
14177403 |
T |
|
| Q |
101 |
tccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14177402 |
tccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttt |
14177303 |
T |
|
| Q |
201 |
tgacatatacacaatgatctgcatctgtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
14177302 |
tgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcgaatttcttataccattgtcttggtgcttgttttaatcc |
14177203 |
T |
|
| Q |
301 |
atacaagctcttcttcaatttgcaaaccaggtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14177202 |
atacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
14177118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 28608373 - 28608757
Alignment:
| Q |
1 |
tgacaaccatagctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28608373 |
tgacaaccatagctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaat |
28608472 |
T |
|
| Q |
101 |
tccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
28608473 |
tccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaatgatgatgaatttgttacctcgaaatgttt |
28608572 |
T |
|
| Q |
201 |
tgacatatacacaatgatctgcatctgtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28608573 |
tgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatcc |
28608672 |
T |
|
| Q |
301 |
atacaagctcttcttcaatttgcaaaccaggtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
28608673 |
atacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttcttaaatccttctggttgaaccatgtagatctcttca |
28608757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 15300018 - 15299634
Alignment:
| Q |
1 |
tgacaaccatagctttctagcttttcggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaat |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
15300018 |
tgacaaccatagctttctagatttccggtctcgcaaagtcttcatgcctaagatttgctttgcagggcctagatttttcatgtcgaaggattttgacaat |
15299919 |
T |
|
| Q |
101 |
tccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttt |
200 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
15299918 |
tcatttttcaaatcaccaatcatatcctcgtcttgccccactatcaacttatcatctacatataacagaaggatgataaatttgttacctcgaaatattt |
15299819 |
T |
|
| Q |
201 |
tgacatatacacaatgatctgcatctgtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
15299818 |
tgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtaaaatttcttataccattgtcttggtgcttgtcttaatcc |
15299719 |
T |
|
| Q |
301 |
atacaagctcttcttcaatttgcaaaccaggtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299718 |
atacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
15299634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 6692255 - 6692200
Alignment:
| Q |
260 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
315 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
6692255 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
6692200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 796566 - 796621
Alignment:
| Q |
260 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
315 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
796566 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
796621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 8273261 - 8273206
Alignment:
| Q |
260 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
315 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
8273261 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
8273206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 19944205 - 19944150
Alignment:
| Q |
260 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
315 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
19944205 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
19944150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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