View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8983_low_17 (Length: 406)
Name: NF8983_low_17
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 27874806 - 27874417
Alignment:
| Q |
1 |
tacctaagatagactttactgcatcagtgtatgtgtaatttctctgtccattaacagagtcatctgttctataacactgtgttaatagactagaagtgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874806 |
tacctaagatagactttactgcatcagtgtatgtgtaatttctctgtccattaacagagtcatctgttctataacactgtgttaatagactagaagtgta |
27874707 |
T |
|
| Q |
101 |
aagattgacaacggcaaagagaatcatgacaacaggtccaacagcccaaccaagttgagctattgcccacgccaatgaaaggactccagagcctatcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874706 |
aagattgacaacggcaaagagaatcatgacaacaggtccaacagcccaaccaagttgagctattgcccacgccaatgaaaggactccagagcctatcaca |
27874607 |
T |
|
| Q |
201 |
gcagtgatgatatgagcagttgcagtccaaaatgttcctacaatacaacagttgattctttattattttttatcaacaggaatcgaactcgatacctcgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874606 |
gcagtgatgatatgagcagttgcagtccaaaatgttcctacaatacaacagttgattctttattattttttatcaacaggaatcgaactcgatacctcgg |
27874507 |
T |
|
| Q |
301 |
atacatggtctaaattttcaacttaacaataaattaaacctgttctcttgagacgaccatcgtcgtcgaagcacttggaatagttgggct |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874506 |
atacatggtctaaattttcaacttaacaataaattaaacctgttctcttgagacgaccatcgtcgtcgaagcacttggaatagttgggct |
27874417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 40203709 - 40203593
Alignment:
| Q |
114 |
gcaaagagaatcatgacaacaggtccaacagcccaaccaagttgagctattgcccacgccaatgaaaggactccagagcctatcacagcagtgatgatat |
213 |
Q |
| |
|
|||||||||||||| |||| ||| ||| || ||| ||||||||||| || ||||| || | || || |||||||| ||||||||||| || || | || |
|
|
| T |
40203709 |
gcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacagctgttattacat |
40203610 |
T |
|
| Q |
214 |
gagcagttgcagtccaa |
230 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
40203609 |
gtgcacttgcagtccaa |
40203593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University