View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8983_low_19 (Length: 376)

Name: NF8983_low_19
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8983_low_19
NF8983_low_19
[»] chr6 (7 HSPs)
chr6 (45-252)||(4842138-4842344)
chr6 (287-367)||(26460949-26461028)
chr6 (190-252)||(4846386-4846448)
chr6 (287-355)||(19272676-19272743)
chr6 (189-251)||(18727201-18727263)
chr6 (1-55)||(4804271-4804325)
chr6 (9-63)||(4805422-4805476)
[»] chr5 (1 HSPs)
chr5 (287-376)||(16831797-16831886)
[»] chr1 (1 HSPs)
chr1 (287-376)||(27129946-27130035)
[»] scaffold0417 (1 HSPs)
scaffold0417 (287-376)||(998-1087)
[»] chr4 (2 HSPs)
chr4 (287-342)||(50687230-50687285)
chr4 (283-347)||(49526857-49526919)
[»] chr8 (1 HSPs)
chr8 (286-352)||(15911406-15911472)
[»] scaffold1898 (1 HSPs)
scaffold1898 (289-352)||(1026-1089)
[»] chr2 (1 HSPs)
chr2 (287-347)||(10480787-10480845)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 252
Target Start/End: Original strand, 4842138 - 4842344
Alignment:
Q  45 gagaattgtgatctaatgcagctgatgccgcctcaattgtgatcgcactgtagtttcacgactcagatcatggtcataaaaaattgttatatagttttag 144  Q
    |||| |||||||| ||||  || ||||||||||||||| |||||||| |||||||||||  ||||||| ||||||||||||||| ||| |||||||||||    
T  4842138 gagagttgtgatcaaatgtggccgatgccgcctcaattatgatcgcattgtagtttcacagctcagatgatggtcataaaaaatcgttgtatagttttag 4842237  T
Q  145 caacatcaaaaacagttatgttacggatcgaatcacggtcatagacctttatttaaaactcttaaataatttgctcctcttcttctacaatcgcaaaaca 244  Q
    |||||| |||||| ||||||| |||| ||| ||||| ||| ||||||||| |||||||||||| ||||||||||||||||| ||||| ||||  ||||||    
T  4842238 caacataaaaaaccgttatgtcacggctcggatcac-gtcgtagacctttgtttaaaactcttcaataatttgctcctctttttctagaatcataaaaca 4842336  T
Q  245 attacaac 252  Q
     |||||||    
T  4842337 gttacaac 4842344  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 287 - 367
Target Start/End: Complemental strand, 26461028 - 26460949
Alignment:
Q  287 tgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgct 367  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  26461028 tgttagccaatatttttaagag-ctatcttaaatgcagtcaaaacaaggttgaccttataatcgaagaaataaagaatgct 26460949  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 4846386 - 4846448
Alignment:
Q  190 cctttatttaaaactcttaaataatttgctcctcttcttctacaatcgcaaaacaattacaac 252  Q
    |||||||||||||| ||| |||||||||||| |||||||||| |||| |||||||||||||||    
T  4846386 cctttatttaaaacccttcaataatttgctcatcttcttctagaatcacaaaacaattacaac 4846448  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 19272743 - 19272676
Alignment:
Q  287 tgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaa 355  Q
    |||||||||||||||| || || ||||| ||||||||||||||| |||||||| |||||||||||||||    
T  19272743 tgttagccaatattttaaaagg-ctatcataaatgcagtcaaactaaagttgaacttataatcgaagaa 19272676  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 18727201 - 18727263
Alignment:
Q  189 acctttatttaaaactcttaaataatttgctcctcttcttctacaatcgcaaaacaattacaa 251  Q
    ||||||||||||||||||| |||||||  ||||||| |||||| |||| ||||||||||||||    
T  18727201 acctttatttaaaactctttaataattgtctcctctacttctagaatcacaaaacaattacaa 18727263  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4804271 - 4804325
Alignment:
Q  1 aatcacaatgaagttttggtcacgttttgatttttattattgtggagaattgtga 55  Q
    |||||| |||||||||| |||||||||||||  ||| ||||||||||||| ||||    
T  4804271 aatcacgatgaagtttttgtcacgttttgatcgttaatattgtggagaatcgtga 4804325  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 4805422 - 4805476
Alignment:
Q  9 tgaagttttggtcacgttttgatttttattattgtggagaattgtgatctaatgc 63  Q
    ||||||||||||||| |||||||  ||| |||||||||||| ||||||| |||||    
T  4805422 tgaagttttggtcacattttgatccttactattgtggagaactgtgatcaaatgc 4805476  T

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Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 287 - 376
Target Start/End: Original strand, 16831797 - 16831886
Alignment:
Q  287 tgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgctttcttattc 376  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  16831797 tgttagccaatatttttaaagagctatcttaaatgcagtcaaaccaaggttgaccttataatcgaagaaataaagaatgctctcttattc 16831886  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 287 - 376
Target Start/End: Original strand, 27129946 - 27130035
Alignment:
Q  287 tgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgctttcttattc 376  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  27129946 tgttagccaatatttttaaggagctattataaatgcagtcaaaccaaggttgaccttataaccgaagaaataaagaatgctctcttattc 27130035  T

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Target: scaffold0417 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 376
Target Start/End: Original strand, 998 - 1087
Alignment:
Q  287 tgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaagaaataaagaatgctttcttattc 376  Q
    |||||||| ||||||| || ||||||||||||||| ||||||| ||| ||||||||| | |||||||||||||||||| || ||||||||    
T  998 tgttagcctatattttaaaagggctatcttaaatgtagtcaaatcaaggttgaccttgtcatcgaagaaataaagaatactctcttattc 1087  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 50687230 - 50687285
Alignment:
Q  287 tgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgacct 342  Q
    ||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  50687230 tgttaacctatatttttaaagggttatcttaaatgcagtcaaaccaaagttgacct 50687285  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 49526919 - 49526857
Alignment:
Q  283 taactgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataa 347  Q
    |||||||||||| ||||||||||||  |||||||||||| |||||||| ||  ||||||||||||    
T  49526919 taactgttagcctatatttttaagg--ctatcttaaatgtagtcaaactaagattgaccttataa 49526857  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 15911406 - 15911472
Alignment:
Q  286 ctgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaa 352  Q
    ||||||||| | |||||||| ||||||||||||||||| |||||| | |||||||||||| ||||||    
T  15911406 ctgttagcctacatttttaaagggctatcttaaatgcaatcaaactagagttgaccttatgatcgaa 15911472  T

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Target: scaffold1898 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1898
Description:

Target: scaffold1898; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 1026 - 1089
Alignment:
Q  289 ttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataatcgaa 352  Q
    |||||| ||||||||||  |||||||||| |||||||||||||  |||||||||||| ||||||    
T  1026 ttagcctatatttttaaacggctatcttacatgcagtcaaaccgtagttgaccttatgatcgaa 1089  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 10480845 - 10480787
Alignment:
Q  287 tgttagccaatatttttaaggggctatcttaaatgcagtcaaaccaaagttgaccttataa 347  Q
    |||||||| ||||||||||||  |||||||||||| | |||||| || |||||||||||||    
T  10480845 tgttagcctatatttttaagg--ctatcttaaatgaaatcaaactaaggttgaccttataa 10480787  T

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