View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_low_22 (Length: 365)
Name: NF8983_low_22
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 350
Target Start/End: Complemental strand, 3373772 - 3373427
Alignment:
| Q |
5 |
aaatttcatctgttatcatttgacctacatgtgtgcaaaattgaccatgtaaaatttatacatgtgcatgcagtacggttttgtttgtttctaaatcatg |
104 |
Q |
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| T |
3373772 |
aaatttcatctcttatcatttgacctacatgtatgcaaaattgaccatgtaaaatttatacatgtgcatgcagtacgattttgttggtttctaaatcatg |
3373673 |
T |
|
| Q |
105 |
atgaaattcgagctaaagttgagaaagattatgagcacttctcaagtgctatgcttcatgtcttcagagcctcaaacctaatgttcagtggagaatatga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3373672 |
atgaaattcgagctaaagttgagaaagattatgagcacttctcaagtgctatgcttcatgtcttcagagcctcaaacctaatgttcagtggagaatatga |
3373573 |
T |
|
| Q |
205 |
actcaaggaagctagaactttttctaggaaactacttgaacaaattgtttcaacaggcaaaggatgcttattaagacaggtcaattgtctaaactttcat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3373572 |
actcaaggaagctagaactttttctaggaaactacttgaacaaattgtttcaacaggcaaaggatgcttattaagacaggtcaattgtctaaactttcat |
3373473 |
T |
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| Q |
305 |
taaatgatttccaattttgtgtctgaacagatgatgccaaatatct |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3373472 |
taaatgatttccaattttgtgtctgaacagatgatgccaaatatct |
3373427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 66 - 274
Target Start/End: Complemental strand, 3347437 - 3347229
Alignment:
| Q |
66 |
atgtgcatgcagtacggttttgtttgtttctaaatcatgatgaaattcgagctaaagttgagaaagattatgagcacttctcaagtgctatgcttcatgt |
165 |
Q |
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|||| ||||||||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||| |||| ||| ||||||| |||||||| || |
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| T |
3347437 |
atgtacatgcagtacggttttgttggtttctaaatgatgatgaaattcgagctgaaattgagaaagattataagcaattcacaagtgcaatgcttcacgt |
3347338 |
T |
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| Q |
166 |
cttcagagcctcaaacctaatgttcagtggagaatatgaactcaaggaagctagaactttttctaggaaactacttgaacaaattgtttcaacaggcaaa |
265 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | || ||||||||| | ||| |
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| T |
3347337 |
gtttagagcctcaaacctaatgttcagtggagaatatgaacttgaggaagctagaactttttctaggaagctacttgagaagatcgtttcaacaagaaaa |
3347238 |
T |
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| Q |
266 |
ggatgctta |
274 |
Q |
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||||||||| |
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| T |
3347237 |
ggatgctta |
3347229 |
T |
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