View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8983_low_24 (Length: 349)

Name: NF8983_low_24
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8983_low_24
NF8983_low_24
[»] chr8 (20 HSPs)
chr8 (11-332)||(7403711-7404032)
chr8 (20-123)||(3822395-3822498)
chr8 (20-122)||(39435282-39435384)
chr8 (18-123)||(1364-1469)
chr8 (28-123)||(18386707-18386802)
chr8 (18-123)||(32333113-32333218)
chr8 (18-123)||(42192663-42192768)
chr8 (18-122)||(70547-70651)
chr8 (1-89)||(5385371-5385459)
chr8 (51-123)||(6099571-6099643)
chr8 (16-122)||(41753002-41753108)
chr8 (18-123)||(28817255-28817360)
chr8 (18-123)||(45264664-45264768)
chr8 (11-123)||(41849248-41849360)
chr8 (1-123)||(4530989-4531111)
chr8 (36-122)||(12534760-12534846)
chr8 (1-123)||(31695276-31695398)
chr8 (52-122)||(40911221-40911291)
chr8 (18-119)||(44124028-44124130)
chr8 (18-118)||(18752345-18752445)
[»] chr3 (18 HSPs)
chr3 (18-130)||(55018058-55018170)
chr3 (20-106)||(448901-448987)
chr3 (18-123)||(7824478-7824583)
chr3 (18-107)||(9349700-9349789)
chr3 (18-123)||(29689506-29689611)
chr3 (18-122)||(52500838-52500942)
chr3 (19-122)||(35461504-35461607)
chr3 (18-89)||(38257327-38257398)
chr3 (1-122)||(42392812-42392933)
chr3 (18-106)||(3113019-3113107)
chr3 (52-123)||(28844503-28844574)
chr3 (51-122)||(31255406-31255477)
chr3 (65-123)||(43775222-43775280)
chr3 (16-122)||(50729524-50729630)
chr3 (16-122)||(50783219-50783325)
chr3 (18-123)||(33334607-33334712)
chr3 (15-90)||(8137654-8137727)
chr3 (18-122)||(47635029-47635133)
[»] chr7 (25 HSPs)
chr7 (15-119)||(35577897-35578001)
chr7 (1-123)||(27915587-27915710)
chr7 (29-119)||(8439081-8439171)
chr7 (18-124)||(44083938-44084044)
chr7 (35-89)||(49078931-49078985)
chr7 (30-123)||(2146635-2146728)
chr7 (18-123)||(32606354-32606459)
chr7 (18-123)||(38033728-38033833)
chr7 (28-116)||(27229512-27229600)
chr7 (50-122)||(29255717-29255789)
chr7 (18-97)||(18506300-18506378)
chr7 (46-124)||(25503983-25504061)
chr7 (1-123)||(25546282-25546404)
chr7 (19-89)||(39514008-39514078)
chr7 (18-123)||(31770556-31770661)
chr7 (15-123)||(28110952-28111060)
chr7 (22-82)||(28603051-28603111)
chr7 (28-118)||(43753788-43753878)
chr7 (18-123)||(10220496-10220601)
chr7 (30-123)||(25112283-25112376)
chr7 (28-89)||(48146786-48146847)
chr7 (18-122)||(11355823-11355927)
chr7 (20-124)||(25049984-25050088)
chr7 (15-123)||(43170960-43171068)
chr7 (15-123)||(47960976-47961084)
[»] chr6 (8 HSPs)
chr6 (18-122)||(24619103-24619207)
chr6 (1-123)||(33621493-33621615)
chr6 (1-122)||(4464127-4464248)
chr6 (28-122)||(11572008-11572102)
chr6 (1-74)||(33653875-33653946)
chr6 (1-122)||(21037291-21037411)
chr6 (1-122)||(28322932-28323053)
chr6 (19-124)||(2959147-2959252)
[»] chr4 (25 HSPs)
chr4 (52-124)||(12867839-12867911)
chr4 (18-123)||(12735430-12735535)
chr4 (18-122)||(55214652-55214756)
chr4 (17-122)||(2864771-2864876)
chr4 (1-122)||(19849510-19849631)
chr4 (18-123)||(28798412-28798517)
chr4 (15-119)||(22607988-22608092)
chr4 (18-122)||(43139930-43140034)
chr4 (52-119)||(2804525-2804592)
chr4 (18-127)||(1173946-1174055)
chr4 (68-121)||(40292689-40292742)
chr4 (18-123)||(53457823-53457928)
chr4 (35-122)||(54768473-54768560)
chr4 (20-89)||(29581069-29581138)
chr4 (16-111)||(1125898-1125993)
chr4 (18-89)||(39807877-39807948)
chr4 (18-121)||(41679375-41679478)
chr4 (1-76)||(50033428-50033503)
chr4 (15-82)||(52768321-52768388)
chr4 (19-121)||(516481-516583)
chr4 (52-106)||(22910315-22910369)
chr4 (52-106)||(22968153-22968207)
chr4 (18-119)||(50035894-50035996)
chr4 (18-123)||(238482-238587)
chr4 (18-123)||(12767086-12767191)
[»] chr1 (15 HSPs)
chr1 (15-106)||(5943697-5943788)
chr1 (20-123)||(39284289-39284392)
chr1 (18-123)||(41761435-41761540)
chr1 (18-122)||(192415-192519)
chr1 (18-122)||(13109770-13109874)
chr1 (18-123)||(45813035-45813140)
chr1 (20-98)||(7059491-7059569)
chr1 (18-122)||(26032798-26032905)
chr1 (35-110)||(35224352-35224427)
chr1 (21-123)||(46447404-46447506)
chr1 (18-123)||(50106220-50106325)
chr1 (1-123)||(7275680-7275802)
chr1 (20-77)||(38817225-38817282)
chr1 (18-123)||(48660021-48660126)
chr1 (18-122)||(2088929-2089033)
[»] chr2 (20 HSPs)
chr2 (20-123)||(39535560-39535663)
chr2 (15-125)||(11459712-11459822)
chr2 (30-123)||(11708677-11708770)
chr2 (18-123)||(29659242-29659347)
chr2 (28-122)||(45201906-45202000)
chr2 (18-123)||(10639630-10639735)
chr2 (18-123)||(34460368-34460473)
chr2 (20-122)||(40786235-40786337)
chr2 (1-122)||(19048754-19048875)
chr2 (16-89)||(34239842-34239915)
chr2 (18-106)||(42025686-42025775)
chr2 (1-89)||(15782623-15782710)
chr2 (18-106)||(37197634-37197722)
chr2 (20-123)||(4851319-4851422)
chr2 (28-123)||(11816585-11816680)
chr2 (62-123)||(3177541-3177602)
chr2 (35-123)||(7275927-7276016)
chr2 (30-123)||(19537306-19537399)
chr2 (51-119)||(4800879-4800947)
chr2 (54-106)||(40825218-40825270)
[»] scaffold0032 (1 HSPs)
scaffold0032 (18-122)||(56481-56585)
[»] chr5 (10 HSPs)
chr5 (19-123)||(2970983-2971087)
chr5 (18-123)||(1191564-1191669)
chr5 (18-122)||(9576985-9577089)
chr5 (18-122)||(13203957-13204061)
chr5 (21-122)||(2786271-2786372)
chr5 (18-123)||(27721430-27721535)
chr5 (64-123)||(11124651-11124710)
chr5 (18-104)||(19181729-19181815)
chr5 (18-123)||(35317721-35317826)
chr5 (18-122)||(12257356-12257460)
[»] scaffold0053 (1 HSPs)
scaffold0053 (18-106)||(22179-22267)
[»] scaffold0352 (1 HSPs)
scaffold0352 (1-122)||(8950-9071)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-122)||(114252-114373)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 7403711 - 7404032
Alignment:
Q  11 taatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaatta 110  Q
    |||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  7403711 taatcactgaaattaagctcacaaacaactgtgatgtctcggattcgaactcgagtcacgacgtccgaccttacaattttgacatttggcagttgaatta 7403810  T
Q  111 gaacttctagacactccaagactatcttttagttgctatgatcaataactcgttttaactcttatcctctacacgcgactacatagactaatcaaaataa 210  Q
     || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7403811 aaaattctagacactccaagactatcttttagttgctatgatcaataattcgttttaactcttatcctctacatgcgactacatagactaatcaaaataa 7403910  T
Q  211 ttgaatatatagtaacannnnnnnatcaatgaatgttatcatatatcttaagtattatgtacgctaaatttaaataattgtacattcatgactcttcttt 310  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7403911 ttgaatatatagtaacatttttttatcaatgaatgttatcatatatcttaagtattatgtacgctaaatttaaataattgtacattaatgactcttcttt 7404010  T
Q  311 tggacaagattgtacatccatg 332  Q
    ||||||||||||||||| ||||    
T  7404011 tggacaagattgtacattcatg 7404032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 3822498 - 3822395
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||||| |||||| ||||||||||  || ||||||||||| |||||||| |||||||||||||||||||   |||||| |||||||| |||||||||||    
T  3822498 aaattaaactcacacacaactgtgagatcctgggttcgaacccgggtcacaacgtccgaccttacaatttcggcatttgccagttgaactagaacttcta 3822399  T
Q  120 gaca 123  Q
    ||||    
T  3822398 gaca 3822395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 39435384 - 39435282
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||||| |||||| |||||||||| |||| |||||||||| | | ||| ||||||||||||| ||||||| ||||||| |||||||  |||||||||||    
T  39435384 aaattaaactcacacacaactgtgaggtctcgggttcgaacccagatcatgacgtccgaccttgcaattttgacatttgccagttgagctagaacttcta 39435285  T
Q  120 gac 122  Q
    |||    
T  39435284 gac 39435282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 1364 - 1469
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  ||||||||||  ||||||| ||||||| |||| |||||||  |||||| |||||||  |||||||||    
T  1364 tgaaaataaactcacacacaactgtgaggtcccgggttcgaaccagggtcacaacgtccggccttgcaattttggcatttgccagttgagctagaacttc 1463  T
Q  118 tagaca 123  Q
    ||||||    
T  1464 tagaca 1469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 18386802 - 18386707
Alignment:
Q  28 ctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    |||||| |||||||||| |||  |||||||||| || |||| ||| ||||||||| |||||| | |||||| |||||||  |||||||||||||||    
T  18386802 ctcacacacaactgtgaggtcccgggttcgaacccgagtcatgacatccgaccttgcaatttcagcatttgtcagttgagctagaacttctagaca 18386707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 32333218 - 32333113
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| |||||||| ||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  32333218 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 32333119  T
Q  118 tagaca 123  Q
    ||||||    
T  32333118 tagaca 32333113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 42192663 - 42192768
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| ||||||||||  ||  |||||||||||||||||| |||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  42192663 tgaaaataaactcacacacaactgtgagatcccgggttcgaactcgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 42192762  T
Q  118 tagaca 123  Q
    ||||||    
T  42192763 tagaca 42192768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 70547 - 70651
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||| ||| ||||||| ||||||||||||| ||||||   |||||| |||||||  ||| |||||    
T  70547 tgaaaataaactcacacacaactgtgaggtcccgggttcaaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttc 70646  T
Q  118 tagac 122  Q
    |||||    
T  70647 tagac 70651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5385459 - 5385371
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    |||||||| | ||||| ||||||||| |||||| |||||||||| |||  ||||||||||  ||||||||||||||  |||| ||||||    
T  5385459 atgaagtggtaaatcactgaaattaaactcacacacaactgtgaggtcccgggttcgaacctgggtcacgacgtccagccttgcaattt 5385371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 6099643 - 6099571
Alignment:
Q  51 gggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    |||||||||||||||||| |||||||| |||| ||||||  |||||||  ||||||| ||| |||||||||||    
T  6099643 gggttcgaactcgggtcatgacgtccggccttgcaatttcgacatttgcaagttgaactaggacttctagaca 6099571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 41753002 - 41753108
Alignment:
Q  16 attgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaact 115  Q
    ||||||||||| || ||| ||||||||||  | ||||||||||| |||| ||||||| ||||  ||| ||||||  ||||||| |||||||  ||| |||    
T  41753002 attgaaattaaacttacacacaactgtgagattttgggttcgaattcggatcacgacatccggtcttgcaatttcgacatttgtcagttgagctaggact 41753101  T
Q  116 tctagac 122  Q
    |||||||    
T  41753102 tctagac 41753108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 28817360 - 28817255
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| ||||||||||  ||  |||||||||| |||||||| ||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  28817360 tgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 28817261  T
Q  118 tagaca 123  Q
    ||||||    
T  28817260 tagaca 28817255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 45264664 - 45264768
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| | |||||||| |||  |||||||||| || |||||||||| ||||||  ||||||   |||||| ||||||| |||| |||||    
T  45264664 tgaaattaaactcacacaaaactgtgaggtcccgggttcgaacccgagtcacgacgttcgacctg-caatttcggcatttgccagttgagttaggacttc 45264762  T
Q  118 tagaca 123  Q
    ||||||    
T  45264763 tagaca 45264768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 41849248 - 41849360
Alignment:
Q  11 taatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaatta 110  Q
    |||||| ||||||||| |||||| ||||| |||| ||   || ||||||| | | ||||||||||||||||| ||||||   |||||| |||||||||||    
T  41849248 taatcactgaaattaaactcacacacaacagtgaggttccggattcgaacccagatcacgacgtccgaccttgcaatttcggcatttgccagttgaatta 41849347  T
Q  111 gaacttctagaca 123  Q
      ||||| |||||    
T  41849348 agacttccagaca 41849360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4530989 - 4531111
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||||||| |||||| ||| |||||| |||  |||||||||| ||||||| |||||||  |||| ||||||   |||||| |    
T  4530989 atgaagtggtaaaccactgaaattaaactcacacacagctgtgaggtcccgggttcgaacccgggtcatgacgtccagccttgcaatttcggcatttgcc 4531088  T
Q  101 agttgaattagaacttctagaca 123  Q
    | ||||  ||| |||||||||||    
T  4531089 aattgagctaggacttctagaca 4531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 12534760 - 12534846
Alignment:
Q  36 caactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagac 122  Q
    |||||||||  || ||||||||||| ||| |||||||||||| |||| ||||||   |||||| |||||||  ||| ||||||||||    
T  12534760 caactgtgagatcctgggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 12534846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 31695276 - 31695398
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || |||||||||||| |||||| |||| ||||| |||   ||||||||  ||  ||| ||| ||| ||||| ||||||| |||| || |    
T  31695276 atgaagtggtaaaccattgaaattaaactcacacacaattgtgaggtcccaggttcgaatccgaatcatgacatccaaccttgcaattttgacatgtgcc 31695375  T
Q  101 agttgaattagaacttctagaca 123  Q
    ||||||  |||||||||||||||    
T  31695376 agttgagctagaacttctagaca 31695398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 40911291 - 40911221
Alignment:
Q  52 ggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagac 122  Q
    ||||||||| |||||||||||||||| |||| ||||||   |||||| |||||||  ||| ||||||||||    
T  40911291 ggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgagctagcacttctagac 40911221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 44124130 - 44124028
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccga-ccttacaattttaacatttgacagttgaattagaactt 116  Q
    ||||||||| || ||| |||||||||| ||||  |||||||| |||||||||||| ||| | | |||||||||    ||||||||||||| |||||| ||    
T  44124130 tgaaattaaacttacacacaactgtgaagtctcaggttcgaattcgggtcacgacatccaatctttacaatttcggtatttgacagttgagttagaattt 44124031  T
Q  117 cta 119  Q
    |||    
T  44124030 cta 44124028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 18752445 - 18752345
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| | |||| |||||||| | ||   |||||||||| | | ||||||||||||||||||||||||    ||||| |||||||| ||| |||||    
T  18752445 tgaaattaaacccacacacaactgtaaggttccgggttcgaaccccgatcacgacgtccgaccttacaatttcggtatttgtcagttgaactaggacttc 18752346  T
Q  118 t 118  Q
    |    
T  18752345 t 18752345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 55018058 - 55018170
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| |||||||||||||||| |||| ||||||| ||||||| ||||||| |||| |||||    
T  55018058 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttgacatttgccagttgagttaggacttc 55018157  T
Q  118 tagacactccaag 130  Q
    |||||| ||||||    
T  55018158 tagacaatccaag 55018170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 448901 - 448987
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    ||||||| ||||||||||||||||| ||| | |||||||| |||| |||||||||||| |||||||||||| ||||||| |||||||    
T  448901 aaattaaactcacaaacaactgtgaggtcctaggttcgaattcggatcacgacgtccggccttacaattttgacatttgtcagttga 448987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 7824478 - 7824583
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| ||||||| |||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  7824478 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 7824577  T
Q  118 tagaca 123  Q
    ||||||    
T  7824578 tagaca 7824583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 9349700 - 9349789
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaa 107  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| ||| ||||||||||||||||| ||||||   |||||| ||||||||    
T  9349700 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacgacgtccgaccttgcaatttcggcatttgccagttgaa 9349789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 29689506 - 29689611
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| ||||||| |||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  29689506 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 29689605  T
Q  118 tagaca 123  Q
    ||||||    
T  29689606 tagaca 29689611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 52500942 - 52500838
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| || |  ||||||||| ||| ||| |||||||| |||||||||||  ||||||| |||||||  ||| |||||    
T  52500942 tgaaaataaactcacacacaactgtgaggtttcaggttcgaacccggatcatgacgtccggccttacaatttcgacatttgccagttgagctaggacttc 52500843  T
Q  118 tagac 122  Q
    |||||    
T  52500842 tagac 52500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 35461504 - 35461607
Alignment:
Q  19 gaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttct 118  Q
    |||| ||| |||||| |||||||||| ||   |||||||||| ||| |||| |||||||||||| ||||||   |||||| |||||||  ||||||||||    
T  35461504 gaaaataaactcacacacaactgtgaggttccgggttcgaacccggatcacaacgtccgaccttgcaatttcggcatttgccagttgagctagaacttct 35461603  T
Q  119 agac 122  Q
    ||||    
T  35461604 agac 35461607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 38257327 - 38257398
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    ||||||||| |||||| |||| ||||| ||  ||||||||||| | ||||||||||||||||||| ||||||    
T  38257327 tgaaattaaactcacacacaattgtgaggttctgggttcgaacccaggtcacgacgtccgaccttgcaattt 38257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 42392812 - 42392933
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||||||| |||||| |||| ||||| |||  |||||||| | ||| ||| ||||||||||||| ||||||   |||||| |    
T  42392812 atgaagtggtaaaccactgaaattaaactcacacacaattgtgaggtcccgggttcgagcccggatcatgacgtccgaccttgcaatttcggcatttgcc 42392911  T
Q  101 agttgaattagaacttctagac 122  Q
    ||||||  ||| ||||||||||    
T  42392912 agttgagctaggacttctagac 42392933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 3113019 - 3113107
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    ||||| ||| |||||| ||||||||||  ||  |||||||||||||||| |||||||||| |||| ||||||   |||||| |||||||    
T  3113019 tgaaaataaactcacacacaactgtgagatcccgggttcgaactcgggttacgacgtccggccttgcaatttcggcatttgccagttga 3113107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 28844574 - 28844503
Alignment:
Q  52 ggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    ||||||||| |||||||| ||||||| |||| ||||||   |||||| |||||||  |||||||||||||||    
T  28844574 ggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctagaacttctagaca 28844503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 31255477 - 31255406
Alignment:
Q  51 gggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagac 122  Q
    |||||||||| |||||||||||||||  | ||| |||||  ||||||| ||||||| |||| ||||||||||    
T  31255477 gggttcgaacccgggtcacgacgtccagctttataatttcgacatttgtcagttgagttaggacttctagac 31255406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 43775280 - 43775222
Alignment:
Q  65 gtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    ||||| |||||||||||||||||||   |||||| ||||||| ||||||||| ||||||    
T  43775280 gtcacaacgtccgaccttacaatttcggcatttgccagttgagttagaacttttagaca 43775222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 50729630 - 50729524
Alignment:
Q  16 attgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaact 115  Q
    ||||||||||| |||||| | ||||| || ||||   |||||||  | | |||||||||| |||||||||||||   |||||| |||||||  |||||||    
T  50729630 attgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggcatttgtcagttgagctagaact 50729531  T
Q  116 tctagac 122  Q
    |||||||    
T  50729530 tctagac 50729524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 50783219 - 50783325
Alignment:
Q  16 attgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaact 115  Q
    ||||||||||| |||||| | ||||| || ||||   |||||||  | | |||||||||| |||||||||||||   |||||| |||||||  |||||||    
T  50783219 attgaaattaaactcacataaaactgcgaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggcatttgtcagttgagctagaact 50783318  T
Q  116 tctagac 122  Q
    |||||||    
T  50783319 tctagac 50783325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 33334712 - 33334607
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| |||||||||| |||  || ||||||||| |||||| ||||||| | || ||||||   ||||||  ||||||  ||| |||||    
T  33334712 tgaaattaaactcacacacaactgtgaggtcccggattcgaactcaggtcacaacgtccggctttgcaatttcggcatttgcaagttgagctaggacttc 33334613  T
Q  118 tagaca 123  Q
    ||||||    
T  33334612 tagaca 33334607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 8137654 - 8137727
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaatttt 90  Q
    |||||||||||| ||||||  ||||||||| || |  | ||| ||||||||||| ||||||||||||| |||||||    
T  8137654 cattgaaattaaactcaca--caactgtgaggtttcagattcaaactcgggtcatgacgtccgaccttgcaatttt 8137727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 47635029 - 47635133
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| || ||| | ||||| || ||| ||| ||||||| | |||||| | |||||||||| |||||  || ||||  |||||||||||| |||||    
T  47635029 tgaaattaaacttacacataactgcgaggtcctggattcgaacccaggtcacaatgtccgaccttgcaattccaaaatttaccagttgaattaggacttc 47635128  T
Q  118 tagac 122  Q
    |||||    
T  47635129 tagac 47635133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 35577897 - 35578001
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaac 114  Q
    |||||||||||| || ||| |||| ||||| |||| |||||||||||||||||||||| ||||| |||| ||||||| ||||||  |||||| ||| |||    
T  35577897 cattgaaattaaacttacacacaattgtgaagtctcgggttcgaactcgggtcacgacatccgatcttaaaattttagcatttgctagttgagttaaaac 35577996  T
Q  115 ttcta 119  Q
    |||||    
T  35577997 ttcta 35578001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 27915587 - 27915710
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcg-ggtcacgacgtccgaccttacaattttaacatttga 99  Q
    |||||||| | | ||||||||||||| |||| | ||||||||||  |||| |||||||||||  ||||||||||||||||||| |||||| | |||||      
T  27915587 atgaagtggtaattcattgaaattaaactcatacacaactgtgagatcttaggttcgaactcaaggtcacgacgtccgaccttgcaatttcagcatttac 27915686  T
Q  100 cagttgaattagaacttctagaca 123  Q
    ||||||| |||| |||||||||||    
T  27915687 cagttgagttaggacttctagaca 27915710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 8439171 - 8439081
Alignment:
Q  29 tcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||| |||||||||| ||| ||||||||||  |||||||| |||||||||||| |||||||  |||||| |||||||| ||| |||||||    
T  8439171 tcacacacaactgtgaggtcctgggttcgaatccgggtcacaacgtccgaccttgcaattttggcatttgccagttgaactaggacttcta 8439081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 44084044 - 44083938
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| |||||||| ||||||| |||| |||||||  |||||| |||||||  ||| |||||    
T  44084044 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttc 44083945  T
Q  118 tagacac 124  Q
    |||||||    
T  44083944 tagacac 44083938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 49078931 - 49078985
Alignment:
Q  35 acaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    |||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||    
T  49078931 acaactgtgaggtcatggattcgaactcggatcacgacgtccgaccttacaattt 49078985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 2146728 - 2146635
Alignment:
Q  30 cacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    |||| |||||||||| ||||||||||||||| |||||||| ||||||| |||| ||||||   |||||  |||||||  ||| |||||||||||    
T  2146728 cacacacaactgtgaggtcttgggttcgaacccgggtcacaacgtccggccttgcaatttcggcattttccagttgagctaggacttctagaca 2146635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 32606354 - 32606459
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    |||||||||  ||||| | |||||| | |||| ||||||||||  ||||||||||||||| |||| ||||||    ||||| ||||||| ||||||||||    
T  32606354 tgaaattaaattcacataaaactgtaaggtctcgggttcgaacctgggtcacgacgtccggccttgcaatttcggtatttgtcagttgagttagaacttc 32606453  T
Q  118 tagaca 123  Q
    ||||||    
T  32606454 tagaca 32606459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 38033833 - 38033728
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  || || |||| ||| |||| | |||||||||||||||||   |||||| ||||||| ||||||||||    
T  38033833 tgaaaataaactcacacacaactgtgaggtcccggatttgaacccggatcacaatgtccgaccttacaatttcggcatttgccagttgagttagaacttc 38033734  T
Q  118 tagaca 123  Q
    ||||||    
T  38033733 tagaca 38033728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 27229512 - 27229600
Alignment:
Q  28 ctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaactt 116  Q
    |||||| |||||||||| |||  |||||||||| | |||||||||||||| |||| ||||||  ||||||| ||||||| |||| ||||    
T  27229512 ctcacacacaactgtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcgacatttgtcagttgagttaggactt 27229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 29255789 - 29255717
Alignment:
Q  50 tgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagac 122  Q
    ||||||||||| ||| ||||||||||| ||||| |||||||  |||||| |||||||  ||||||||||||||    
T  29255789 tgggttcgaacccggatcacgacgtccaaccttgcaattttggcatttgccagttgagctagaacttctagac 29255717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 18506300 - 18506378
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacattt 97  Q
    ||||||||| |||||| ||| |||||| |||| |||||||||||||| ||| ||  ||||||||| ||||||||||||||    
T  18506300 tgaaattaaactcacacaca-ctgtgaagtctcgggttcgaactcggatcatgatatccgaccttgcaattttaacattt 18506378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 25503983 - 25504061
Alignment:
Q  46 gtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagacac 124  Q
    ||||||||||| || | |||| |||||||||| | || ||||||| ||||||| |||||||| || |||||||||||||    
T  25503983 gtcttgggttcaaatttgggttacgacgtccggctttgcaattttgacatttgtcagttgaactaaaacttctagacac 25504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 25546282 - 25546404
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||||||| |||||| |||||||||| |||  || ||||||| ||||||| |||||||| |||| ||||||   |||||  |    
T  25546282 atgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccggattcgaacccgggtcatgacgtccggccttgcaatttcggcatttacc 25546381  T
Q  101 agttgaattagaacttctagaca 123  Q
    ||||||  ||| |||||||||||    
T  25546382 agttgagctaggacttctagaca 25546404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 39514008 - 39514078
Alignment:
Q  19 gaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    |||||||| |||||| | |||||| | |||  ||||||||||||||||||||||||||| |||| ||||||    
T  39514008 gaaattaaactcacacataactgtaaggtcccgggttcgaactcgggtcacgacgtccggccttgcaattt 39514078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 31770556 - 31770661
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| ||||||| ||| |||| |||| ||||||   |||||| |||||||  ||| |||||    
T  31770556 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacatccggccttgcaatttcggcatttgccagttgagctaggacttc 31770655  T
Q  118 tagaca 123  Q
    ||||||    
T  31770656 tagaca 31770661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 28110952 - 28111060
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaac 114  Q
    |||||||||||| ||||||||||| | ||| || | |||||| ||    ||||||||||||||| ||| ||||||  ||||||| ||||||| |||  ||    
T  28110952 cattgaaattaatctcacaaacaaatatgaagtttcgggttcaaatctaggtcacgacgtccgatcttgcaatttcgacatttgtcagttgagttaagac 28111051  T
Q  115 ttctagaca 123  Q
    |||||||||    
T  28111052 ttctagaca 28111060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 28603111 - 28603051
Alignment:
Q  22 attaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgacctt 82  Q
    ||||| |||||| |||| ||||| |||| |||||||||||| |||||||||||||| ||||    
T  28603111 attaaactcacatacaattgtgaagtctcgggttcgaactcaggtcacgacgtccggcctt 28603051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 43753788 - 43753878
Alignment:
Q  28 ctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttct 118  Q
    |||||| |||||||||| ||   |||||||||| | |||||||||||||| |||| ||||||   |||||| |||||||| ||| ||||||    
T  43753788 ctcacatacaactgtgaggttccgggttcgaacccaggtcacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttct 43753878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 10220496 - 10220601
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| | |||||||| || | || ||||||| | | ||| |||||||  ||||||||||||  | |||| ||||||| |||| |||||    
T  10220496 tgaaattaaactcacacaaaactgtgaggtttcggattcgaacccagatcatgacgtcctgccttacaattttggcttttgccagttgagttaggacttc 10220595  T
Q  118 tagaca 123  Q
    ||||||    
T  10220596 tagaca 10220601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 25112283 - 25112376
Alignment:
Q  30 cacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    |||| |||||||||| |||  |||||||||| | ||||| ||||||||||||| ||||||    ||||| |||||||  ||| |||||||||||    
T  25112283 cacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccgaccttgcaatttcggtatttgccagttgagctaggacttctagaca 25112376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 48146847 - 48146786
Alignment:
Q  28 ctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    |||||| |||||||||| |||  |||||||||| ||||||||||| || |||||| ||||||    
T  48146847 ctcacacacaactgtgaggtcccgggttcgaacccgggtcacgacatctgaccttgcaattt 48146786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 11355927 - 11355823
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| ||||||||||  ||  |||||||||  | | |||  |||||||||||| ||||||   ||||||  ||||||| |||||||||    
T  11355927 tgaaattaaactcacacacaactgtgagatcccgggttcgaatccagatcataacgtccgaccttgcaatttcggcatttgttagttgaactagaacttc 11355828  T
Q  118 tagac 122  Q
    |||||    
T  11355827 tagac 11355823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 25049984 - 25050088
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||||| |||||| ||||||||||  || || |||| ||  | |||||||||||| |||||| ||||||   |||||   |||||| ||||||||||||    
T  25049984 aaattaaactcacatacaactgtgagatcatgagttcaaatccaggtcacgacgtctgacctttcaatttcggcattttctagttgagttagaacttcta 25050083  T
Q  120 gacac 124  Q
    |||||    
T  25050084 gacac 25050088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 43170960 - 43171068
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaac 114  Q
    |||||||||||| |||||| ||||||| || ||||  | || ||||  |||| |||||||||| |||| ||||||   |||||| ||||||| |||| ||    
T  43170960 cattgaaattaaactcacatacaactgggaagtctccgatttgaacctgggttacgacgtccggccttgcaatttcggcatttgtcagttgagttaggac 43171059  T
Q  115 ttctagaca 123  Q
    || ||||||    
T  43171060 ttatagaca 43171068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 47960976 - 47961084
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaac 114  Q
    |||||||||||| |||||| ||||||  || |||  |||||||||| ||| ||| |||||| ||||||  ||||||  ||||||  |||||| |||  ||    
T  47960976 cattgaaattaaactcacacacaactacgaggtcccgggttcgaacccggttcatgacgtctgaccttgtaattttggcatttgcaagttgagttaagac 47961075  T
Q  115 ttctagaca 123  Q
    |||||||||    
T  47961076 ttctagaca 47961084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 24619103 - 24619207
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| |||| | ||| |||  ||| |||||||||||||||||||| || |||||||||||| ||||||| ||||||| |||| |||||    
T  24619103 tgaaattaaactcacacacaattatgaggtcacgggatcgaactcgggtcacgacgttcggccttacaattttgacatttgtcagttgagttaggacttc 24619202  T
Q  118 tagac 122  Q
    |||||    
T  24619203 tagac 24619207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 33621615 - 33621493
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||||||| |||||| |||||||||| |||  |||||||||| ||||||| |||||||| |||| ||||||   |||||| |    
T  33621615 atgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgcc 33621516  T
Q  101 agttgaattagaacttctagaca 123  Q
    ||||||  ||| |||||||||||    
T  33621515 agttgagctaggacttctagaca 33621493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4464248 - 4464127
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||||||| |||||| |||||||||| |||   ||||||||| ||| ||| |||||||| |||| ||||||   |||||| |    
T  4464248 atgaagtggtaaaccactgaaattaaactcacacacaactgtgaggtcccaggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgtc 4464149  T
Q  101 agttgaattagaacttctagac 122  Q
    ||||||| ||||||||||||||    
T  4464148 agttgaactagaacttctagac 4464127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 11572102 - 11572008
Alignment:
Q  28 ctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagac 122  Q
    |||||| |||||||||| |||  |||||||||| |||||||||||||| | |||||||||||   ||||||  ||||||  ||| ||||||||||    
T  11572102 ctcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtctggccttacaatttctgcatttgttagttgagctaggacttctagac 11572008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33653875 - 33653946
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgt 74  Q
    |||||||| | | |||||||||||||||||||| |  |||||||  |||||||||||||||| |||||||||||    
T  33653875 atgaagtgataattcattgaaattaagctcacata--actgtgagatcttgggttcgaactcaggtcacgacgt 33653946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21037411 - 21037291
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | | ||| ||||| ||| |||||| |||||||||| |||  || ||||||| || ||||| ||||||| |||| |||||| | |||||| |    
T  21037411 atgaagtggtaattcactgaaaataaactcacacacaactgtgaggtcc-ggattcgaacccgagtcacaacgtccggccttgcaatttcagcatttgcc 21037313  T
Q  101 agttgaattagaacttctagac 122  Q
    ||||||  ||||||||||||||    
T  21037312 agttgagctagaacttctagac 21037291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28323053 - 28322932
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||| ||| |||||| |||| ||||| |||  |||||||||| ||| ||| |||||||| |||||||||||   |||||| |    
T  28323053 atgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgcc 28322954  T
Q  101 agttgaattagaacttctagac 122  Q
    ||||||  ||| ||||||||||    
T  28322953 agttgagctaggacttctagac 28322932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 2959252 - 2959147
Alignment:
Q  19 gaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttct 118  Q
    |||||||| |||||| |||||||||| |||| ||||||||||    |||||||  |||| |||| ||||||   ||||||  |||||| |||| ||||||    
T  2959252 gaaattaaactcacacacaactgtgaggtctcgggttcgaacctaagtcacgatatccggccttgcaatttcggcatttgctagttgagttaggacttct 2959153  T
Q  119 agacac 124  Q
    ||||||    
T  2959152 agacac 2959147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 12867911 - 12867839
Alignment:
Q  52 ggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagacac 124  Q
    ||||||||||||||||||||||||||||||| ||||||   ||||||||||||||  ||||||||||||||||    
T  12867911 ggttcgaactcgggtcacgacgtccgaccttgcaatttcggcatttgacagttgagctagaacttctagacac 12867839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 12735535 - 12735430
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| ||| ||||||||||| |||||||| ||||| | ||||||||||||  |||||| |||||||  ||| |||||    
T  12735535 tgaaaataaactcacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtctggccttacaattttggcatttgtcagttgagctagtacttc 12735436  T
Q  118 tagaca 123  Q
    ||||||    
T  12735435 tagaca 12735430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 55214756 - 55214652
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||| | |||||||||| |||  |||||||||| |||||||||||||||| |||| |||||||  |||||||||||||| |||  |||||    
T  55214756 tgaaaataaactcatacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttggcatttgacagttgagttaagacttc 55214657  T
Q  118 tagac 122  Q
    |||||    
T  55214656 tagac 55214652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 2864771 - 2864876
Alignment:
Q  17 ttgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaactt 116  Q
    ||||||||||||||||| |||||| ||| ||  | ||||||||| |||||||||||||||  |||| ||||||   |||||| ||||||| |||| ||||    
T  2864771 ttgaaattaagctcacacacaactctgaggttctaggttcgaacccgggtcacgacgtcccgccttgcaatttaggcatttgccagttgagttaggactt 2864870  T
Q  117 ctagac 122  Q
    ||||||    
T  2864871 ctagac 2864876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19849510 - 19849631
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || |||||||| ||| |||||| |||||||||| |||  |||||||||| ||| |||||||||||| |||| ||||||   |||||| |    
T  19849510 atgaagtggtaaaccattgaaaataaactcacacacaactgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgcc 19849609  T
Q  101 agttgaattagaacttctagac 122  Q
    ||||||  ||| ||||||||||    
T  19849610 agttgagctaggacttctagac 19849631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 28798412 - 28798517
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||| | |||  |||||||||| |||||||||||||||| |||| ||||||   |||||| |||||||| ||| |||||    
T  28798412 tgaaaataaactcacacacaactgtaaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttc 28798511  T
Q  118 tagaca 123  Q
    ||||||    
T  28798512 tagaca 28798517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 22608092 - 22607988
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaac 114  Q
    |||||||||||| |||| | |||||||||| |||  |||||||||| |||||||||||||||| |||| ||||||  |||| || |||||||  ||| ||    
T  22608092 cattgaaattaaactcagacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgacatctgtcagttgagctaggac 22607993  T
Q  115 ttcta 119  Q
    |||||    
T  22607992 ttcta 22607988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 43139930 - 43140034
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| ||||||| |||||||| |||| ||||||   |||||| |||||||  |||||||||    
T  43139930 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctagaacttc 43140029  T
Q  118 tagac 122  Q
    |||||    
T  43140030 tagac 43140034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 2804592 - 2804525
Alignment:
Q  52 ggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||||||| |||||||| ||||||||||||||||||||| |||||| |||||| ||||  |||||||    
T  2804592 ggttcgaacccgggtcacaacgtccgaccttacaattttagcatttgtcagttggattaagacttcta 2804525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 1174055 - 1173946
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| | ||||| |||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  1174055 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 1173956  T
Q  118 tagacactcc 127  Q
    ||||||||||    
T  1173955 tagacactcc 1173946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 40292689 - 40292742
Alignment:
Q  68 acgacgtccgaccttacaattttaacatttgacagttgaattagaacttctaga 121  Q
    ||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  40292689 acgacgtccgaccttacaattttgacatttatcagttgagttagaacttctaga 40292742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 53457928 - 53457823
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  || ||||||| ||||||| ||||||||||||| ||||||   |||||| |||||||  ||| |||||    
T  53457928 tgaaaataaactcacacacaactgtgaggtcccggattcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttc 53457829  T
Q  118 tagaca 123  Q
    ||||||    
T  53457828 tagaca 53457823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 54768473 - 54768560
Alignment:
Q  35 acaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagac 122  Q
    |||||||||| ||| ||||||||||| ||||||| |||||||| |||| ||||||   |||||| |||||||  ||| ||||||||||    
T  54768473 acaactgtgaggtcctgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 29581069 - 29581138
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    ||||||| |||||| |||||||||| |||| ||||||||||   |||||||||||||| |||| ||||||    
T  29581069 aaattaaactcacacacaactgtgaggtctcgggttcgaacctaggtcacgacgtccggccttgcaattt 29581138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 1125993 - 1125898
Alignment:
Q  16 attgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattag 111  Q
    ||||||||||| |||| | ||||||||||  |||||||||| || ||   ||||||| ||||| ||||||||||  |||||| |||||||| ||||    
T  1125993 attgaaattaaactcatacacaactgtgagatcttgggttcaaattcaaatcacgacatccgatcttacaatttcgacatttcacagttgagttag 1125898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 39807948 - 39807877
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    ||||||||| |||||| |||||||||| |||  | ||||||||||||||||||| ||| | |||| ||||||    
T  39807948 tgaaattaaactcacacacaactgtgaggtcccgagttcgaactcgggtcacgatgtctggccttgcaattt 39807877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 41679478 - 41679375
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||  |||||| |||||||||| ||  | | || ||||||| ||||||||||||||||||  ||||| | |||||| |||||||  ||||||||     
T  41679478 tgaaattacactcacacacaactgtgaagttgtagatttgaactcgagtcacgacgtccgaccttgtaatttcagcatttgtcagttgagctagaacttt 41679379  T
Q  118 taga 121  Q
    ||||    
T  41679378 taga 41679375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50033503 - 50033428
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtcc 76  Q
    |||||||| | | ||||||||||||| || ||| |||||||||||||||   |||||||| |||||||| ||||||    
T  50033503 atgaagtggtaattcattgaaattaaacttacacacaactgtgatgtctcatgttcgaacccgggtcacaacgtcc 50033428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 52768321 - 52768388
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgacctt 82  Q
    |||||||||||| |||||| ||||||||||  || | |||||||| |||  |||||||||||||||||    
T  52768321 cattgaaattaaactcacacacaactgtgagatccttggttcgaattcgaatcacgacgtccgacctt 52768388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 516481 - 516583
Alignment:
Q  19 gaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttct 118  Q
    |||| ||| |||||| |||| |||||  || ||||||| |||||| ||||| |||||| ||||| ||||||| | |||||   ||||| |||||||||||    
T  516481 gaaaataaactcacacacaattgtgagatcctgggttcaaactcgagtcacaacgtccaaccttgcaattttgatatttgttggttgagttagaacttct 516580  T
Q  119 aga 121  Q
    |||    
T  516581 aga 516583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 22910315 - 22910369
Alignment:
Q  52 ggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    ||||||||| ||||||||||||||||||||| ||||||  || |||| |||||||    
T  22910315 ggttcgaacccgggtcacgacgtccgaccttgcaatttcgacttttgtcagttga 22910369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 22968207 - 22968153
Alignment:
Q  52 ggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    ||||||||| ||||||||||||||||||||| ||||||  || |||| |||||||    
T  22968207 ggttcgaacccgggtcacgacgtccgaccttgcaatttcgacttttgtcagttga 22968153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 50035996 - 50035894
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccga-ccttacaattttaacatttgacagttgaattagaactt 116  Q
    ||||||||| || ||| |||||||||| ||||  |||||||| |||||||||||| ||| | | |||||||||    ||||||||||||| |||||| ||    
T  50035996 tgaaattaaacttacacacaactgtgaagtctcaggttcgaattcgggtcacgacatccaatctttacaatttcggtatttgacagttgagttagaattt 50035897  T
Q  117 cta 119  Q
    |||    
T  50035896 cta 50035894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 238482 - 238587
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| | ||||| | |||||  |||| ||||||   ||||||||||||||  ||| |||||    
T  238482 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccaggtcatggcgtccagccttgcaatttcggcatttgacagttgagctaggacttc 238581  T
Q  118 tagaca 123  Q
    ||||||    
T  238582 tagaca 238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 12767191 - 12767086
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| |||||||||| || | || ||||||| | | ||| ||||||||| ||||||||||   |||||  |||||||  ||| |||||    
T  12767191 tgaaattaaactcacacacaactgtgaggtttcggattcgaacccagatcatgacgtccgatcttacaatttcggcatttaccagttgagctaggacttc 12767092  T
Q  118 tagaca 123  Q
    ||||||    
T  12767091 tagaca 12767086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 5943788 - 5943697
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    |||||||||||| ||||||||||||||||| ||| || |||||||| |||||||||||||||| |||| ||||||   |||||| |||||||    
T  5943788 cattgaaattaaactcacaaacaactgtgaggtcctgagttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgtcagttga 5943697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 39284392 - 39284289
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||||| |||||| |||||||||| ||||| ||||||||| ||  |||||||||||||||||||||||| |||||| | |||||||  ||  |||||||    
T  39284392 aaattaaactcacatacaactgtgaggtcttaggttcgaacccgaatcacgacgtccgaccttacaatttcaacattcgtcagttgagctatgacttcta 39284293  T
Q  120 gaca 123  Q
    ||||    
T  39284292 gaca 39284289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 41761435 - 41761540
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| ||| ||||||||||| |||||||| ||||||| |||| ||||||   |||||| |||||||| ||| |||||    
T  41761435 tgaaaataaactcacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgaactaggacttc 41761534  T
Q  118 tagaca 123  Q
    ||||||    
T  41761535 tagaca 41761540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 192519 - 192415
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| ||| ||||||||||| ||| |||| ||||||| |||| |||||||| |||||| |||||||  ||| |||||    
T  192519 tgaaaataaactcacacacaactgtgaggtcctgggttcgaacacggatcacaacgtccggccttgcaattttagcatttgtcagttgagctaggacttc 192420  T
Q  118 tagac 122  Q
    |||||    
T  192419 tagac 192415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 13109874 - 13109770
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| |||||||||| ||  | |||||||| |||||| ||||||||||||||| |||||| | |||||| ||||| |  |||||||||    
T  13109874 tgaaattaaactcacacacaactgtgaggttctaggttcgaattcgggttacgacgtccgaccttgcaatttaatcatttgtcagttaagctagaacttc 13109775  T
Q  118 tagac 122  Q
    |||||    
T  13109774 tagac 13109770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 45813035 - 45813140
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| |||||||||| |||||||||| ||||||   |||||| |||||||  ||| |||||    
T  45813035 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgatgtccgaccttgcaatttcggcatttgtcagttgagctaggacttc 45813134  T
Q  118 tagaca 123  Q
    ||||||    
T  45813135 tagaca 45813140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 7059569 - 7059491
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttg 98  Q
    ||||||| |||||| |||||||||| ||||  | ||||||| |||||||||||||| |||||| ||||||| |||||||    
T  7059569 aaattaaactcacacacaactgtgaggtctcagattcgaacccgggtcacgacgtctgaccttgcaattttgacatttg 7059491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 26032905 - 26032798
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccg---accttacaattttaacatttgacagttgaattagaac 114  Q
    ||||||||| |||||| | |||||||| ||    ||||||||| ||||||||||||||||   ||||||||||||   |||||| |||||||||||| ||    
T  26032905 tgaaattaaactcacacaaaactgtgaggttccaggttcgaacccgggtcacgacgtccgccgaccttacaatttcggcatttgtcagttgaattaggac 26032806  T
Q  115 ttctagac 122  Q
    ||||||||    
T  26032805 ttctagac 26032798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 35224427 - 35224352
Alignment:
Q  35 acaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaatta 110  Q
    |||||||||| ||| ||||||||||| ||||||| |||||||| |||| || ||||  |||||| |||||||||||    
T  35224427 acaactgtgaggtcctgggttcgaacccgggtcatgacgtccggccttgcatttttcgcatttgccagttgaatta 35224352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 46447404 - 46447506
Alignment:
Q  21 aattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctag 120  Q
    |||||| |||||| | |||||||| |||  |||||||||| ||||| ||||||||   |||| ||||||   |||||| |||||||| ||||||||||||    
T  46447404 aattaaactcacacataactgtgaggtcccgggttcgaacccgggttacgacgtcgagccttgcaatttcggcatttgccagttgaactagaacttctag 46447503  T
Q  121 aca 123  Q
    |||    
T  46447504 aca 46447506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 50106220 - 50106325
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| | |||||||| |||  |||||||||| |||||||| |||| || |||| |||| | |||||||  ||||| |||||| |||||    
T  50106220 tgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacaacgttcggccttgcaatctcaacatttaccagttaaattaggacttc 50106319  T
Q  118 tagaca 123  Q
    ||||||    
T  50106320 tagaca 50106325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 7275802 - 7275680
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||||||| |||| | |||||||||| ||   |||||||||  || ||||  |||||||||||||||||||  ||||||| |    
T  7275802 atgaagtggtaaaccactgaaattaaactcatacacaactgtgaagttccgggttcgaatccgagtcataacgtccgaccttacaatttcgacatttgcc 7275703  T
Q  101 agttgaattagaacttctagaca 123  Q
    |||||| |||  | |||||||||    
T  7275702 agttgagttaagatttctagaca 7275680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 38817225 - 38817282
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccg 77  Q
    |||||||  ||||| |||| ||||| |||| |||||||||||||| ||||||||||||    
T  38817225 aaattaaattcacacacaattgtgaggtctcgggttcgaactcggatcacgacgtccg 38817282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 48660126 - 48660021
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| ||||||||||  ||  |||||||||| |||||||  ||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  48660126 tgaaaataaactcacacacaactgtgagatcccgggttcgaacccgggtcataacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 48660027  T
Q  118 tagaca 123  Q
    ||||||    
T  48660026 tagaca 48660021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 2088929 - 2089033
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||| | |||||| |||| ||||| ||  || |||||||| || ||||||| ||| |||||||||||||  | ||||| |||||||  ||| |||||    
T  2088929 tgaaattgaactcacatacaattgtgaggttctgagttcgaacccgagtcacgatgtctgaccttacaatttcgatatttgccagttgagctaggacttc 2089028  T
Q  118 tagac 122  Q
    |||||    
T  2089029 tagac 2089033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 39535560 - 39535663
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||||| |||||| | |||||||| |||  |||||||||| |||||||||||||||| |||| ||||||  |||||||  |||||| |||| |||||||    
T  39535560 aaattaaactcacataaaactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgacatttgctagttgagttaggacttcta 39535659  T
Q  120 gaca 123  Q
    ||||    
T  39535660 gaca 39535663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 11459822 - 11459712
Alignment:
Q  15 cattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaac 114  Q
    |||||||| ||| | |||| |||||||||| |||  |||||||||| ||||||| ||||||||||||| ||||||   |||||| |||||||  ||| ||    
T  11459822 cattgaaaataaacacacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggac 11459723  T
Q  115 ttctagacact 125  Q
    |||||||||||    
T  11459722 ttctagacact 11459712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 11708770 - 11708677
Alignment:
Q  30 cacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    |||| |||||||||| ||| ||||||||||| |||||||| ||||||| |||||||||||   |||||| |||||||  ||| |||||||||||    
T  11708770 cacacacaactgtgaggtcctgggttcgaacccgggtcacaacgtccggccttacaatttcggcatttgccagttgagctaggacttctagaca 11708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 29659242 - 29659347
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| ||| ||||||||||| |||||||| | || || ||||||||||||  |||||| |||||||  ||| |||||    
T  29659242 tgaaaataaactcacacacaactgtgaggtcatgggttcgaacccgggtcacaatgttcggccttacaattttggcatttgccagttgagctaggacttc 29659341  T
Q  118 tagaca 123  Q
    ||||||    
T  29659342 tagaca 29659347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 45201906 - 45202000
Alignment:
Q  28 ctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagac 122  Q
    |||||| |||||||||| ||   | |||||||||||| |||||||| |||||||||||||||  ||||||| || |||| |||| ||||||||||    
T  45201906 ctcacacacaactgtgaggttccgagttcgaactcggatcacgacgaccgaccttacaatttcgacatttgccaattgagttaggacttctagac 45202000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 10639630 - 10639735
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| ||||||| |||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  10639630 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 10639729  T
Q  118 tagaca 123  Q
    ||||||    
T  10639730 tagaca 10639735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 34460473 - 34460368
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| ||  ||||||||||| |||||||| ||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  34460473 tgaaaataaactcacacacaactgtgaggttctgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctaggacttc 34460374  T
Q  118 tagaca 123  Q
    ||||||    
T  34460373 tagaca 34460368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 40786235 - 40786337
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||||| ||||||  |||||| || ||||| |||||||||  ||||||||||||||| |||| ||||||   |||||| ||||||| |||  |||||||    
T  40786235 aaattaaactcacactcaactgcgaggtcttaggttcgaaccagggtcacgacgtccggccttgcaatttcggcatttgtcagttgagttatgacttcta 40786334  T
Q  120 gac 122  Q
    |||    
T  40786335 gac 40786337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19048875 - 19048754
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||| ||| |||||| |||| ||||| |||  |||||||||| ||| ||| |||||||| |||||||||||   |||||| |    
T  19048875 atgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgcc 19048776  T
Q  101 agttgaattagaacttctagac 122  Q
    ||||||  ||| ||||||||||    
T  19048775 agttgagctaggacttctagac 19048754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 34239842 - 34239915
Alignment:
Q  16 attgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    ||||||||||| |||| | |||||||| | ||  || ||||||||||| ||||||||||| |||||||||||||    
T  34239842 attgaaattaaactcatacacaactgtaaggttctgagttcgaactcgagtcacgacgtctgaccttacaattt 34239915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 42025775 - 42025686
Alignment:
Q  18 tgaaattaag-ctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    |||||||||| |||||| |||| ||||| ||  ||||||||||||| ||||||||| |||| ||||| |||||  ||||||| |||||||    
T  42025775 tgaaattaagactcacacacaattgtgaggttctgggttcgaactcaggtcacgacatccggccttaaaatttcgacatttgtcagttga 42025686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15782710 - 15782623
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattt 89  Q
    |||||||| | || || ||||||||| ||| || ||| |||| | |||| |||||||||| ||||||| ||||||||||||||||||||    
T  15782710 atgaagtggtaaaccactgaaattaaactcccacaca-ctgtaaggtctcgggttcgaacccgggtcatgacgtccgaccttacaattt 15782623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 37197634 - 37197722
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| |||||||||||||||  |||| ||||||   |||||| |||||||    
T  37197634 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacgacgtccagccttgcaatttcggcatttgccagttga 37197722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 4851422 - 4851319
Alignment:
Q  20 aaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    ||||||| |||||| |||||||||| |||  ||||| |||| ||| |||||||||||| | |||||||||   || |||||||||||  ||| ||||| |    
T  4851422 aaattaaactcacacacaactgtgaggtcccgggtttgaacccggatcacgacgtccggctttacaatttcggcaattgacagttgagctaggacttcaa 4851323  T
Q  120 gaca 123  Q
    ||||    
T  4851322 gaca 4851319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 11816585 - 11816680
Alignment:
Q  28 ctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    |||||| |||||||||| ||   |||||||||| | ||||||||||||||||||| ||||||   |||||| |||||||  ||| |||||| ||||    
T  11816585 ctcacatacaactgtgaggttccgggttcgaacccaggtcacgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctggaca 11816680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 3177541 - 3177602
Alignment:
Q  62 cgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    ||||| |||||||| ||||||  |||||||  ||||| ||||||| ||||||||||||||||    
T  3177541 cgggttacgacgtctgaccttgaaattttagtatttgtcagttgagttagaacttctagaca 3177602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 7275927 - 7276016
Alignment:
Q  35 acaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacattt-gacagttgaattagaacttctagaca 123  Q
    |||||||||| |||  |||||||||| |||| |||||| ||||||||| ||||||   ||||| | ||||||| |||| |||||||||||    
T  7275927 acaactgtgaggtcccgggttcgaacccgggccacgacatccgaccttgcaatttcggcattttgtcagttgagttaggacttctagaca 7276016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 19537399 - 19537306
Alignment:
Q  30 cacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    |||| |||||||||| ||   |||||||||| ||| |||| ||||||| |||| ||||||   |||||| |||||||| ||| |||||||||||    
T  19537399 cacacacaactgtgaggttccgggttcgaacccggatcacaacgtccggccttgcaatttcggcatttgccagttgaactaggacttctagaca 19537306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 4800947 - 4800879
Alignment:
Q  51 gggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttcta 119  Q
    |||||||||||| |||||||||||||  |||| ||||||  ||||||| | |||||  |||||||||||    
T  4800947 gggttcgaactcaggtcacgacgtccagccttgcaatttcgacatttgccggttgagctagaacttcta 4800879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 40825218 - 40825270
Alignment:
Q  54 ttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    ||||||| ||||||| ||||||| |||||| ||||||  ||||||||||||||    
T  40825218 ttcgaacccgggtcatgacgtccaaccttataattttggcatttgacagttga 40825270  T

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Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 56585 - 56481
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||||| |||||||| |||||||||||| ||||||   |||||| |||||||  ||| |||||    
T  56585 tgaaaataaactcacacacaactgtgaggtcccgggttcgaacccgggtcacaacgtccgaccttgcaatttcggcatttgccagttgagctaggacttc 56486  T
Q  118 tagac 122  Q
    |||||    
T  56485 tagac 56481  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 2971087 - 2970983
Alignment:
Q  19 gaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttct 118  Q
    |||| ||| |||||| |||||||||| ||||  ||||||||| |||||||| ||||| |||||||||||||  ||||||  |||||||  ||| ||||||    
T  2971087 gaaaataaactcacacacaactgtgaggtctcaggttcgaacccgggtcacaacgtctgaccttacaatttcgacatttatcagttgagctaggacttct 2970988  T
Q  119 agaca 123  Q
    |||||    
T  2970987 agaca 2970983  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 1191564 - 1191669
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| |||| ||||| |||  |||||||||| ||| |||||||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  1191564 tgaaattaaactcacacacaattgtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcgtcatttgccagttgagctaggacttc 1191663  T
Q  118 tagaca 123  Q
    ||||||    
T  1191664 tagaca 1191669  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 9576985 - 9577089
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||| | ||||| |||||| | |||| |||||| | |||||| |||||||  ||| |||||    
T  9576985 tgaaattaaactcacatacaactgtgaggttctgggttcgaacccaggtcatgacgtctggccttgcaatttcagcatttgccagttgagctaggacttc 9577084  T
Q  118 tagac 122  Q
    |||||    
T  9577085 tagac 9577089  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 13204061 - 13203957
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| | |||||||| |||  |||||||||| |||||||||||||||| |||| ||||||   |||||| |||||||  ||| |||||    
T  13204061 tgaaaataaactcacacataactgtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttc 13203962  T
Q  118 tagac 122  Q
    |||||    
T  13203961 tagac 13203957  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 2786372 - 2786271
Alignment:
Q  21 aattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctag 120  Q
    |||||| |||| | |||||||||| |||   |||| ||| |||| ||||| ||||||||||||||||||   |||||| || ||||||||| ||||||||    
T  2786372 aattaaactcatacacaactgtgaggtcccaggtttgaattcggatcacggcgtccgaccttacaatttcggcatttgccaattgaattaggacttctag 2786273  T
Q  121 ac 122  Q
    ||    
T  2786272 ac 2786271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 27721535 - 27721430
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    |||||||||  ||||| |||||||||| |||  |||||| ||| |||||||||||||||||| || ||||||   |||||  |||||||  ||| |||||    
T  27721535 tgaaattaaattcacatacaactgtgaggtcccgggttcaaacccgggtcacgacgtccgactttgcaatttcggcattttccagttgagctaggacttc 27721436  T
Q  118 tagaca 123  Q
    ||||||    
T  27721435 tagaca 27721430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 11124710 - 11124651
Alignment:
Q  64 ggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttctagaca 123  Q
    |||||||||||||| |||| ||||||| ||||||| |||||||  ||| |||||||||||    
T  11124710 ggtcacgacgtccggccttgcaattttgacatttgccagttgagctaggacttctagaca 11124651  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 19181815 - 19181729
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagtt 104  Q
    ||||||||| |||||| |||||||||||||  ||  |||||| || ||||| ||||| || |||||| ||||||| ||||| |||||    
T  19181815 tgaaattaaactcacacacaactgtgatgttctgtattcgaattcaggtcatgacgttcgcccttacgattttaatatttgtcagtt 19181729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 35317721 - 35317826
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||||||||| |||  |||||||| | | |||||  |||||||||||| ||||||   |||||| |||||||  ||| |||||    
T  35317721 tgaaaataaactcacacacaactgtgaggtcccgggttcgaccccaggtcataacgtccgaccttgcaatttcggcatttgccagttgagctaggacttc 35317820  T
Q  118 tagaca 123  Q
    ||||||    
T  35317821 tagaca 35317826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 12257460 - 12257356
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttgaattagaacttc 117  Q
    ||||| ||| |||||| |||| | ||| ||| ||||||||||| | |||||| ||||| | |||||||||||   |||||| |||||||  ||| |||||    
T  12257460 tgaaaataaactcacacacaattatgaggtcctgggttcgaacccaggtcacaacgtctggccttacaatttcggcatttgccagttgagctaggacttc 12257361  T
Q  118 tagac 122  Q
    |||||    
T  12257360 tagac 12257356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 22267 - 22179
Alignment:
Q  18 tgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgacagttga 106  Q
    ||||||||| ||||||  ||||||||| |||  ||| |||||| |||||||||||||||| |||||||||||   |||||| |||||||    
T  22267 tgaaattaaactcacacgcaactgtgaggtcccgggctcgaacccgggtcacgacgtccggccttacaatttcggcatttgtcagttga 22179  T

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Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8950 - 9071
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | ||||| ||||||||| |||||| |||||||||| ||| | ||||||||| ||  |||  ||||||  |||||||||||   |||||  |    
T  8950 atgaagtggtaaatcactgaaattaaactcacacacaactgtgaggtcctaggttcgaacccgaatcataacgtcccgccttacaatttcggcatttacc 9049  T
Q  101 agttgaattagaacttctagac 122  Q
    ||||||  ||||||||||||||    
T  9050 agttgagctagaacttctagac 9071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 114373 - 114252
Alignment:
Q  1 atgaagtgtttaatcattgaaattaagctcacaaacaactgtgatgtcttgggttcgaactcgggtcacgacgtccgaccttacaattttaacatttgac 100  Q
    |||||||| | || || ||||| ||| |||||| |||| ||||| |||  |||||||||| ||| ||| |||||||| |||||||||||   |||||| |    
T  114373 atgaagtggtaaaccactgaaactaaactcacacacaattgtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgcc 114274  T
Q  101 agttgaattagaacttctagac 122  Q
    ||||||  ||| ||||||||||    
T  114273 agttgagctaggacttctagac 114252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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