View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8983_low_25 (Length: 321)

Name: NF8983_low_25
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8983_low_25
NF8983_low_25
[»] chr7 (1 HSPs)
chr7 (1-304)||(21235261-21235564)
[»] chr5 (5 HSPs)
chr5 (15-164)||(9361727-9361874)
chr5 (90-176)||(26595766-26595853)
chr5 (15-78)||(7805693-7805756)
chr5 (15-78)||(13582092-13582155)
chr5 (15-87)||(31987367-31987439)
[»] chr2 (3 HSPs)
chr2 (16-160)||(27557094-27557236)
chr2 (57-160)||(44683775-44683877)
chr2 (28-133)||(5771472-5771575)
[»] chr1 (2 HSPs)
chr1 (15-160)||(14724927-14725071)
chr1 (59-164)||(26379249-26379353)
[»] chr6 (4 HSPs)
chr6 (57-164)||(5600296-5600402)
chr6 (90-164)||(34253751-34253826)
chr6 (94-136)||(22714033-22714076)
chr6 (42-117)||(29326243-29326316)
[»] chr4 (6 HSPs)
chr4 (15-159)||(15451795-15451938)
chr4 (57-159)||(15499299-15499400)
chr4 (15-119)||(17360094-17360196)
chr4 (15-78)||(653608-653671)
chr4 (140-187)||(24727404-24727451)
chr4 (15-53)||(30563829-30563867)
[»] chr3 (6 HSPs)
chr3 (58-159)||(1740411-1740511)
chr3 (58-128)||(38002227-38002295)
chr3 (15-86)||(2616913-2616984)
chr3 (65-138)||(25023337-25023408)
chr3 (15-117)||(26929332-26929432)
chr3 (15-72)||(27604568-27604625)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 21235564 - 21235261
Alignment:
Q  1 attattccacgttgaaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgt 100  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||    
T  21235564 attattccacgttgaaaagtggatacccaaagggaacacccttggaggtcacccctcacttatataaacacttattatgtagtatgtacctctccaatgt 21235465  T
Q  101 gagacatttttaagtcataccaacactagttctttctatgtgtttattctttccaactttccacaagaactcactaatgttccaacacattcatgtacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  21235464 gagacatttttaagtcataccaacactagttctttctatgtgtttattctttccaactttccacaagaactcactagtgtaccaacacattcatgtacta 21235365  T
Q  201 ttctcaagtgggaaaaatattcaatacatgttatgaatagttaggtaaattttatttcaaataatatgtgaagggtcactgaagccctactatggatgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21235364 ttctcaagtgggaaaaatattcaatacatgttatgaatagttaggtaaattttatttcaaataatatgtgaagggtcactgaagccctactatggatgga 21235265  T
Q  301 ataa 304  Q
    ||||    
T  21235264 ataa 21235261  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 9361874 - 9361727
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaag 114  Q
    ||||||||||||| |||||| ||||| |||||  |||||   ||||||| |||| ||||||||||||||||||  ||||||||||||  |||||||||||    
T  9361874 aaaagtggataccacaagggcacacccttgga--tcaccctccacttatataaatacttactaggtagtatgt--ctctccaatgtggcacatttttaag 9361779  T
Q  115 tcataccaacactagttctttc--tatgtgtttattctttccaactttccac 164  Q
    ||||||||||||||| |||| |   | |||| ||||||||||||||||||||    
T  9361778 tcataccaacactagctcttacgaaaggtgtctattctttccaactttccac 9361727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 26595766 - 26595853
Alignment:
Q  90 ctctccaatgtgagacattttt-aagtcatacc-aacactagttctttctatgtgtttattctttccaactttccacaagaactcacta 176  Q
    ||||||||| |||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||| |||||  |||||||||||    
T  26595766 ctctccaatatgagacatttttcaattcatacccaacactagttctttccatgtgtttattctttccaac-ttccatcagaactcacta 26595853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 7805693 - 7805756
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactag 78  Q
    |||||||| ||||||||||| ||||| |||||||||||   || ||||| ||||||||||||||    
T  7805693 aaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacacttactag 7805756  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 13582155 - 13582092
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactag 78  Q
    |||||||| ||||||||||| ||||| |||||||||||   || ||||| ||||||||||||||    
T  13582155 aaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacacttactag 13582092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 31987367 - 31987439
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgt 87  Q
    |||| ||| ||||||||||| ||| | ||||||||||||   | ||||| ||||||||||||||| |||||||    
T  31987367 aaaaatgggtaccccaagggtacatccttggaggtcaccctccgcttatataaacacttactaggcagtatgt 31987439  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 27557094 - 27557236
Alignment:
Q  16 aaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaagt 115  Q
    ||||||| ||||||||| ||||||| ||| ||  |||| | ||||||| ||||||||||||||| ||||||   |||||||||||| ||||||||||| |    
T  27557094 aaagtgggtaccccaagagaacacccttgtagaccacccc-cacttatataaacacttactaggcagtatga--ctctccaatgtgggacatttttaatt 27557190  T
Q  116 cataccaacactagttctttct-atgtgtttattctttccaacttt 160  Q
    |||||||||||||| |||| || | ||||||||||| |||||||||    
T  27557191 cataccaacactagatcttactaaggtgtttattctatccaacttt 27557236  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 44683775 - 44683877
Alignment:
Q  57 cacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaagtcataccaacactagttctttctatg-tgtttattctttcca 155  Q
    ||||||| ||||||||||||| ||| ||||    |||||||||||| |||||||||||||||||||||||||  |||| ||| | ||||||||| |||||    
T  44683775 cacttatataaacacttactaagtattatggt--tctccaatgtgaaacatttttaagtcataccaacactaactcttactaagatgtttattcattcca 44683872  T
Q  156 acttt 160  Q
    |||||    
T  44683873 acttt 44683877  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 5771472 - 5771575
Alignment:
Q  28 ccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacattttt-aagtcataccaacac 126  Q
    ||||||| ||||| |||||||| ||| || |||||| |||||||||||||    ||||||  ||||||||||||||| |||||| || ||||||||||||    
T  5771472 ccaagggcacacccttggaggtaacccct-acttatataaacacttactaaaaggtatgt--ctctccaatgtgagatatttttcaattcataccaacac 5771568  T
Q  127 tagttct 133  Q
    |||||||    
T  5771569 tagttct 5771575  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 14724927 - 14725071
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaag 114  Q
    |||||||| |||||||| || ||| ||||| |||||||| | ||||||| ||||||||||| ||||||||||   ||||| |||||| ||| ||| ||||    
T  14724927 aaaagtgggtaccccaatggcacatctttgtaggtcaccccccacttatataaacacttaccaggtagtatg--actctcaaatgtgggacctttataag 14725024  T
Q  115 tcataccaacactagttctt-tctatgtgtttattctttccaacttt 160  Q
    |||||| |||| ||| ||||  | | |||||||||||||||||||||    
T  14725025 tcatacaaacattagctcttaccaaggtgtttattctttccaacttt 14725071  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 26379353 - 26379249
Alignment:
Q  59 cttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaagtcataccaacactagttctttctatg-tgtttattctttccaac 157  Q
    ||||| ||||||||||||| ||||||||   || |||||| ||||| |||||||| ||||| ||||||||| |||| ||| | |||||||||| ||||||    
T  26379353 cttatataaacacttactaagtagtatga--ctatccaatatgagatatttttaaatcatatcaacactagctcttactaaggtgtttattctatccaac 26379256  T
Q  158 tttccac 164  Q
    |||||||    
T  26379255 tttccac 26379249  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 5600402 - 5600296
Alignment:
Q  57 cacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaagtcataccaacactagttctt-tctatgtgtttattctttcca 155  Q
    ||||||| |||||||||||||||||||||||  || | ||||||| ||||||||||||||||||||||||||  ||||  | | ||||||||| ||||||    
T  5600402 cacttatataaacacttactaggtagtatgt--cttttcaatgtgggacatttttaagtcataccaacactaactcttaccaaggtgtttattatttcca 5600305  T
Q  156 actttccac 164  Q
     ||||||||    
T  5600304 tctttccac 5600296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 34253826 - 34253751
Alignment:
Q  90 ctctccaatgtgagacatttttaagtcataccaacactag-ttctttctatgtgtttattctttccaactttccac 164  Q
    |||||||||||| ||||||||||||||||||||| ||||| || |  | |||||||||||||||| ||||||||||    
T  34253826 ctctccaatgtgggacatttttaagtcataccaatactagcttttaccaatgtgtttattctttcaaactttccac 34253751  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 22714033 - 22714076
Alignment:
Q  94 ccaatgtgagacattttt-aagtcataccaacactagttctttc 136  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  22714033 ccaatgtgagacatttttcaattcataccaacactagttctttc 22714076  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 29326243 - 29326316
Alignment:
Q  42 ttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaagtca 117  Q
    |||||||||||| | | ||||| ||||||||| |||| | || ||  |||| ||||||||||||||||||||||||    
T  29326243 ttggaggtcaccccacccttatataaacacttgctagttggtgtg--cctcaccaatgtgagacatttttaagtca 29326316  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 15451795 - 15451938
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaag 114  Q
    |||||||| ||||||||||| ||||| ||  ||| ||   | ||||||| |||||||||||||||||||||  ||| |||||||||| ||||||||||||    
T  15451795 aaaagtgggtaccccaagggcacacccttttaggccattccccacttatataaacacttactaggtagtatc-acc-ctccaatgtgggacatttttaag 15451892  T
Q  115 tcataccaacactagttctttc-tatgtgtttattctttccaactt 159  Q
    | ||||||||||||| |||| |  | ||||||||||| ||||||||    
T  15451893 ttataccaacactagctcttgcaaaggtgtttattctatccaactt 15451938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 15499299 - 15499400
Alignment:
Q  57 cacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaagtcataccaacactagttctttc-tatgtgtttattctttcca 155  Q
    ||||||| ||||||||||||| ||||||  |  | |||||||||| ||||||||||||||||||||||||||| |||| |  | ||||||||||| ||||    
T  15499299 cacttatataaacacttactaagtagta--tcgccctccaatgtgggacatttttaagtcataccaacactagctcttgcaaaggtgtttattctatcca 15499396  T
Q  156 actt 159  Q
    ||||    
T  15499397 actt 15499400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 17360094 - 17360196
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaag 114  Q
    |||||||| ||||||||||| ||||||||||| | |||| | || |||| |||||| ||||||| ||||||||  |||| ||||||  |||||| |||||    
T  17360094 aaaagtgggtaccccaagggcacacctttggaagccaccccccatttatataaacatttactagatagtatgt--ctcttcaatgtaggacattcttaag 17360191  T
Q  115 tcata 119  Q
    |||||    
T  17360192 tcata 17360196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 653608 - 653671
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactag 78  Q
    |||||||| ||||||||||| ||||| |||||||||||   || ||||| ||||||||||||||    
T  653608 aaaagtgggtaccccaagggcacacccttggaggtcactcttcccttatataaacacttactag 653671  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 24727451 - 24727404
Alignment:
Q  140 gtgtttattctttccaactttccacaagaactcactaatgttccaaca 187  Q
    ||||||||||||||||||||||||| | |||| |||| ||||||||||    
T  24727451 gtgtttattctttccaactttccactataacttactagtgttccaaca 24727404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 30563867 - 30563829
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcacc 53  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  30563867 aaaagtggataccccaagggcacacccttggaggtcacc 30563829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 1740511 - 1740411
Alignment:
Q  58 acttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaagtcataccaacactagttctttct-atgtgtttattctttccaa 156  Q
    |||||| |||||| |||||||||||||||   | ||||||||||  |||||||||||||||||||||||||| |||| || | ||||||||||| |||||    
T  1740511 acttatataaacaattactaggtagtatga--cactccaatgtggaacatttttaagtcataccaacactagctcttgctaaggtgtttattctatccaa 1740414  T
Q  157 ctt 159  Q
    |||    
T  1740413 ctt 1740411  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 38002227 - 38002295
Alignment:
Q  58 acttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaagtcataccaacacta 128  Q
    |||||| ||||||||||||| ||||||||   |||||||||||||||||||| ||||||||||||||||||    
T  38002227 acttatataaacacttactacgtagtatga--ctctccaatgtgagacatttgtaagtcataccaacacta 38002295  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 2616984 - 2616913
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatg 86  Q
    |||||||| ||||||||||| ||||| ||| ||| |||  ||||||||| ||||||||||||||||||||||    
T  2616984 aaaagtgggtaccccaagggcacaccgttgtaggccactcctcacttatataaacacttactaggtagtatg 2616913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 25023408 - 25023337
Alignment:
Q  65 taaacacttactaggtagtatgtacctctccaatgtgagacatttttaagtcataccaacactagttctttcta 138  Q
    ||||||||||||||||||||||| ||||  |||||||   ||||||||||||||||| ||||||| ||||||||    
T  25023408 taaacacttactaggtagtatgtccctc--caatgtggatcatttttaagtcatacccacactagctctttcta 25023337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 26929332 - 26929432
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacacttactaggtagtatgtacctctccaatgtgagacatttttaag 114  Q
    |||||||| ||||||||||| ||||  |||||||||||| | | ||||| ||||||||| |||| | |  |||| ||| ||||||||| |||||||||||    
T  26929332 aaaagtgggtaccccaagggcacacacttggaggtcaccccacccttatataaacacttgctagttgg--tgtaactcaccaatgtgaaacatttttaag 26929429  T
Q  115 tca 117  Q
    |||    
T  26929430 tca 26929432  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 27604625 - 27604568
Alignment:
Q  15 aaaagtggataccccaagggaacacctttggaggtcaccgctcacttatgtaaacact 72  Q
    |||||||| | || |||||||||||| |||||||||||| ||||||||| ||||||||    
T  27604625 aaaagtgggtgccacaagggaacacccttggaggtcacctctcacttatataaacact 27604568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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