View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8983_low_28 (Length: 312)

Name: NF8983_low_28
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8983_low_28
NF8983_low_28
[»] chr4 (7 HSPs)
chr4 (1-185)||(10426748-10426932)
chr4 (183-278)||(10427623-10427718)
chr4 (183-277)||(9199750-9199845)
chr4 (216-277)||(9199512-9199573)
chr4 (183-234)||(9201332-9201384)
chr4 (216-277)||(12094864-12094925)
chr4 (216-277)||(24257703-24257764)
[»] chr7 (5 HSPs)
chr7 (1-151)||(4410741-4410887)
chr7 (183-277)||(20077317-20077412)
chr7 (183-277)||(4407779-4407872)
chr7 (189-270)||(30061499-30061581)
chr7 (153-181)||(4407898-4407926)
[»] chr8 (5 HSPs)
chr8 (183-278)||(26981034-26981130)
chr8 (183-277)||(26083903-26083998)
chr8 (188-277)||(5334273-5334363)
chr8 (220-277)||(42932716-42932773)
chr8 (247-279)||(7496756-7496788)
[»] chr6 (3 HSPs)
chr6 (186-278)||(31442516-31442609)
chr6 (191-277)||(20915980-20916067)
chr6 (208-277)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (188-277)||(6697935-6698025)
chr5 (183-240)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (183-252)||(11582599-11582669)
chr3 (224-280)||(2241513-2241569)
chr3 (201-279)||(39484801-39484881)
chr3 (208-278)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (206-277)||(38996518-38996590)
chr2 (206-278)||(22625385-22625458)
chr2 (208-277)||(28125536-28125606)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 10426748 - 10426932
Alignment:
Q  1 tgaattaataaatatacaatggtgttgataggatttggaaatatgcatcagataagtcttcagccgcacataggagaagctaccaaggatattttcaact 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  10426748 tgaaataataaatatacaatggtgttgataggatttggaaatatgcatcagataagtcttcagccgcgcaaaggagaagctaccaaggatattttcaact 10426847  T
Q  101 tcccttacatttacgatgcagcttatatttattaagataagattagtgcatcaagtcacatgttaagaaggtagcaatgaaccta 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426848 tcccttacatttacgatgcagcttatatttattaagataagattagtgcatcaagtcacatgttaagaaggtagcaatgaaccta 10426932  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 10427623 - 10427718
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 278  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||| ||| |||||||    
T  10427623 ctaagaagaatttaatgcttggatgatggagggaaatattaggttaaaattagggtatgatattgcttgaccaaacaacctttaataaaaaagata 10427718  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 9199845 - 9199750
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||| | | || ||||||||||||||| || | |||||||||||||||||||    
T  9199845 ctaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagctttagtaagaaagat 9199750  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 9199573 - 9199512
Alignment:
Q  216 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    |||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  9199573 aaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 9201384 - 9201332
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaatta 234  Q
    |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  9201384 ctaaggagaatttaatgcttggatgatggtgggaaaatattaggttaaaatta 9201332  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 12094864 - 12094925
Alignment:
Q  216 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    |||||||| |||||||||||||| |   || |||||| |||| |||||||||||||||||||    
T  12094864 aaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 24257764 - 24257703
Alignment:
Q  216 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    |||||||| ||||||||||||||     ||||||||| |||| |||||||||||||||||||    
T  24257764 aaatattaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 4410887 - 4410741
Alignment:
Q  1 tgaattaataaatatacaatggtgttgataggatttggaaatatgcatcagataagtcttcagccgcacataggagaagctaccaaggatattttcaact 100  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||| |     ||||| |||||||||||||||||||||||||||||    
T  4410887 tgaattaattaatatacaatggtgctgataggatttgaaaatatgcatcagatcagtcatt----gcacaaaggagaagctaccaaggatattttcaact 4410792  T
Q  101 tcccttacatttacgatgcagcttatatttattaagataagattagtgcat 151  Q
    | |||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  4410791 ttccttacatttacgatgcaacttatgtttattaagataagattagcgcat 4410741  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 20077317 - 20077412
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    |||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  20077317 ctaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 4407872 - 4407779
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    ||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |  ||| |||||||||||||||||    
T  4407872 ctaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggtatgatattgcttgacc--agacgctttagtaagaaagat 4407779  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 30061581 - 30061499
Alignment:
Q  189 agaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaa 270  Q
    |||||| |||||||| |  ||||||||||| ||||| | | |||||||||||||| || ||||||||| | ||||||||||||    
T  30061581 agaattaaatacttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgatcagacaagctttagtaa 30061499  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 4407926 - 4407898
Alignment:
Q  153 aagtcacatgttaagaaggtagcaatgaa 181  Q
    |||||||||||||||||||||||||||||    
T  4407926 aagtcacatgttaagaaggtagcaatgaa 4407898  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 26981130 - 26981034
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 278  Q
    |||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26981130 ctaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagctttagtaagaaagata 26981034  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 26083998 - 26083903
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    ||||| |||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  26083998 ctaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 26083903  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 277
Target Start/End: Complemental strand, 5334363 - 5334273
Alignment:
Q  188 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| | ||  |||| ||||||||||    
T  5334363 gagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggtatgatattgtttgatcagataatttttaataagaaagat 5334273  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 42932773 - 42932716
Alignment:
Q  220 attaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    |||| |||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  42932773 attaggttaaaattaggatatgatattgcttgatcagacaagctttagtaagaaagat 42932716  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 7496788 - 7496756
Alignment:
Q  247 gcttgatcaaagaagctttagtaagaaagataa 279  Q
    ||||||||||| |||||||||||||||||||||    
T  7496788 gcttgatcaaacaagctttagtaagaaagataa 7496756  T

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Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 31442609 - 31442516
Alignment:
Q  186 aggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 278  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||| ||||||||||||||||||||    
T  31442609 aggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 20915980 - 20916067
Alignment:
Q  191 aatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| | |||||||||||||||||||    
T  20915980 aatttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 7867948 - 7868018
Alignment:
Q  208 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  7867948 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagtaagaaagat 7868018  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 277
Target Start/End: Complemental strand, 6698025 - 6697935
Alignment:
Q  188 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||| ||||||| ||||||||| || | ||| |||||||||||||||    
T  6698025 gagaatttaatgcttgcatgatggagggaaaatattaggttaaaattaaggtatgagattgcttgaccagacaagttttagtaagaaagat 6697935  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 9045218 - 9045160
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtat 240  Q
    ||||||||||||||||  || |||||||||||| |||||||| ||||||||||||||||    
T  9045218 ctaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggtat 9045160  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 11582669 - 11582599
Alignment:
Q  183 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttga 252  Q
    ||||| ||||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  11582669 ctaagaagaatttaatgtttggatgacggagggaaaatattaggttaaaattagggtatgatattgcttga 11582599  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 2241513 - 2241569
Alignment:
Q  224 agttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagataag 280  Q
    ||||||||||| ||||||| |||||||||  ||| |||||||||||||||| |||||    
T  2241513 agttaaaattaaggtatgaaattgcttgacgaaacaagctttagtaagaaaaataag 2241569  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 39484801 - 39484881
Alignment:
Q  201 ttggatgatggagggaaa-tattaagttaaaattagggt-atgatattgcttgatcaaagaagctttagtaagaaagataa 279  Q
    |||| ||||||||||||| ||||| ||||||| |||||| |  |||| |||||| |||| |||||||||||||||||||||    
T  39484801 ttgggtgatggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagataa 39484881  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 15291530 - 15291460
Alignment:
Q  208 atggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 278  Q
    ||||||||||| |||| ||||| |||||||||    || |||||| |||| ||||||||||||||||||||    
T  15291530 atggagggaaaaattaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 38996518 - 38996590
Alignment:
Q  206 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    ||||||||||||| ||||| |||||||||||||||  |||| ||||||||| | |||||||||||||||||||    
T  38996518 tgatggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 22625385 - 22625458
Alignment:
Q  206 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 278  Q
    ||||||||||||| ||||| ||||||||||||||||   ||||||||| || | ||| ||||||||||||||||    
T  22625385 tgatggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 28125606 - 28125536
Alignment:
Q  208 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 277  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  28125606 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

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