View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8983_low_29 (Length: 285)
Name: NF8983_low_29
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 47183063 - 47183135
Alignment:
| Q |
196 |
tcatatcatgaaatattgtccctgctaatcaaaatatatggattggtttcacaaatctggaagatacagcctc |
268 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47183063 |
tcatatcatgaaatattgtccctactaatcaaaatatatggattggtttcacaaatctggaagatacagcctc |
47183135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 47182882 - 47182955
Alignment:
| Q |
60 |
gacaaatcaatttggaaacatgaatacacatnnnnnnntaaaatccatatatagttacgtctctttaatttctt |
133 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47182882 |
gacaaatcaatttggaaacatgaatacgcataaaaaaataaaatccatatatagttacgtctcttcaatttctt |
47182955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University