View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_low_3 (Length: 707)
Name: NF8983_low_3
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_3 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 671; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 5 - 691
Target Start/End: Complemental strand, 51227375 - 51226689
Alignment:
| Q |
5 |
gagaagcagagaaagaaaacatgtcaaccaacgttggtgaaaatgctacaccagaacaaccttcttcagttccaaaattagacaagttgaaaaaagtttc |
104 |
Q |
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| T |
51227375 |
gagaatcacagaaagaaaacatgtcaaccaacgttggtgaaaatgctacaccagaacaaccttcttcagttccaaaattagacaagttgaaaaaagtttc |
51227276 |
T |
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| Q |
105 |
aatcatacctttaattttcttaatcttttatgaggtatcaggtggaccatttggtgtggaagacacagtaagagcagcaggtccattgttgtctcttgtt |
204 |
Q |
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| T |
51227275 |
aatcatacctttaattttcttaatcttttatgaggtatcaggtggaccatttggtgtggaagacacagtaagagcagcaggtccattgttgtctcttgtt |
51227176 |
T |
|
| Q |
205 |
ggtttcttagtttttccactcatttggagtgttcctgaagcattaataactgctgaaatgggtacaatgtttcctgaaaatggtggttatgttgtttggg |
304 |
Q |
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| T |
51227175 |
ggtttcttagtttttccactcatttggagtgttcctgaagcattaataactgctgaaatgggtacaatgtttcctgaaaatggtggttatgttgtttggg |
51227076 |
T |
|
| Q |
305 |
tttcatctgcattaggccctttttggggttttcaacttggttggctgaaatggcttagtggtgtaattgacaatgctttatatccagttttgtttttaga |
404 |
Q |
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| T |
51227075 |
tttcatctgcattaggccctttttggggttttcaacttggttggatgaaatggcttagtggtgtaattgacaatgctttatatccagttttgtttttaga |
51226976 |
T |
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| Q |
405 |
ttatcttaaatcagctattccaattattgctagtggttttccaaggataattgctgttttagttttaactttgattcttacttatatgaattatagagga |
504 |
Q |
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| T |
51226975 |
ttatcttaaatcagctattccaattattgctagtggttttccaaggataattgctgttttagttttaactttgattcttacttatatgaattatagagga |
51226876 |
T |
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| Q |
505 |
ttaacaattgtgggttgggctgctattttattaggaattttttcattgagtccttttcttgttatggggttaatttcaattcctagaataaaaccaaaaa |
604 |
Q |
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| T |
51226875 |
ttaacaattgtgggttgggctgctattttattgggaattttttcattgagtccttttcttgttatggggttaatttcaattcctagaataaaaccaaaaa |
51226776 |
T |
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| Q |
605 |
ggtggaagatgatggatttgaagagtgttaaatggggtttatatttgaatacattgttttggaatttgaattattgggattcagtta |
691 |
Q |
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| T |
51226775 |
ggtggaagatgatggatttgaagagtgttaaatggggtttatatttgaatacattgttttggaatttgaattattgggattcagtta |
51226689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 127 - 419
Target Start/End: Original strand, 11054554 - 11054846
Alignment:
| Q |
127 |
atcttttatgaggtatcaggtggaccatttggtgtggaagacacagtaagagcagcaggtccattgttgtctcttgttggtttcttagtttttccactca |
226 |
Q |
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| T |
11054554 |
atcttctatgaggtatcgggtggaccttttggtgttgaggatactgtgaaagcagcgggtcctttgttagctttacttggattttttgtttttcctttca |
11054653 |
T |
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| Q |
227 |
tttggagtgttcctgaagcattaataactgctgaaatgggtacaatgtttcctgaaaatggtggttatgttgtttgggtttcatctgcattaggcccttt |
326 |
Q |
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| T |
11054654 |
tatggagtgttcctgaagctttgattactgctgaaatgggtaccatgttccctgaaaatagtggttacgttgtttgggtttcgtctgctttaggtccttt |
11054753 |
T |
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| Q |
327 |
ttggggttttcaacttggttggctgaaatggcttagtggtgtaattgacaatgctttatatccagttttgtttttagattatcttaaatcagc |
419 |
Q |
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| T |
11054754 |
ttgggggtttcagcagggttggatgaaatggcttagtggcgtgattgataatgctttgtatcctgttctatttcttgattatcttaagtcagc |
11054846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 203 - 426
Target Start/End: Complemental strand, 42808 - 42585
Alignment:
| Q |
203 |
ttggtttcttagtttttccactcatttggagtgttcctgaagcattaataactgctgaaatgggtacaatgtttcctgaaaatggtggttatgttgtttg |
302 |
Q |
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| T |
42808 |
ttggattcatagttttcccatttatatggagtatccctgaagccttgatcactgctgaaatgggaacaatgttccctgaaaacagtggttatgttgtttg |
42709 |
T |
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| Q |
303 |
ggtttcatctgcattaggccctttttggggttttcaacttggttggctgaaatggcttagtggtgtaattgacaatgctttatatccagttttgttttta |
402 |
Q |
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| T |
42708 |
ggtttcatcagctttaggaccttattggggtttccaacaaggttggatgaaatggattagtggtgtcatagacaatgctttgtatccagttttgtttctt |
42609 |
T |
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| Q |
403 |
gattatcttaaatcagctattcca |
426 |
Q |
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| T |
42608 |
gattatcttaagtcaactattcca |
42585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 589
Target Start/End: Complemental strand, 42520 - 42422
Alignment:
| Q |
491 |
tgaattatagaggattaacaattgtgggttgggctgctattttattaggaattttttcattgagtccttttcttgttatggggttaatttcaattccta |
589 |
Q |
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||||||||||||| ||||| ||||| || | | |||| ||| ||||| ||||||||||| ||||||| |||||||||| || ||||||||||||| |
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| T |
42520 |
tgaattatagaggtttaactattgttggatttgttgctgtttgtttagggattttttcattacttccttttgttgttatgggatttatttcaattccta |
42422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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