View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8983_low_43 (Length: 234)
Name: NF8983_low_43
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 50968740 - 50968942
Alignment:
| Q |
8 |
caatgaaattgacatgcccactgccctttgagtcatgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataacttgtaatc |
107 |
Q |
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| T |
50968740 |
caatgaaattgacatgcccactgccctttgagtcatgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataacttgtaatc |
50968839 |
T |
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| Q |
108 |
gacggaataaaacatatgatatatgacgcaaccatcctcgacgctgcatcgagttgtttcctgaaagtggagattacaaatgagatttagcatggatcag |
207 |
Q |
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| T |
50968840 |
aacggaataaaac-----atatatgacacaaccatcctcgacgctgcattgagttgtgtcctgaaagtggagattacaaatgagatttagcatggatcag |
50968934 |
T |
|
| Q |
208 |
gcgtaaac |
215 |
Q |
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|||||||| |
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| T |
50968935 |
gcgtaaac |
50968942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 50970885 - 50970943
Alignment:
| Q |
41 |
catgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataac |
99 |
Q |
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| T |
50970885 |
catgagttgttaattaatcaaggaaattacactcgatgaaataataaggaaaatataac |
50970943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 11625914 - 11625880
Alignment:
| Q |
53 |
attaatcaaggaaattacactcgatgaaataataa |
87 |
Q |
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| T |
11625914 |
attaatcaaggaaattacactcgatgaaataataa |
11625880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 21185281 - 21185315
Alignment:
| Q |
53 |
attaatcaaggaaattacactcgatgaaataataa |
87 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
21185281 |
attaatcaaggaaatcacactcgatgaaataataa |
21185315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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