View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8983_low_5 (Length: 700)
Name: NF8983_low_5
Description: NF8983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8983_low_5 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 583; Significance: 0; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 13 - 687
Target Start/End: Original strand, 42253168 - 42253842
Alignment:
| Q |
13 |
gattatactgacctcgttgacgtggagcagcaactttcattaactgaaaatgcgatcatgagttcccatgatatatgcttatctttagatgcatcgaaaa |
112 |
Q |
| |
|
|||||| |||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42253168 |
gattatgctgagctcgttgacgtggaacagaaactttcattaactgaaaaggcgatcatgagttcccatgatatatgtttatctttagatgcatcgaaac |
42253267 |
T |
|
| Q |
113 |
atgaacctaatatagagggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgcgttttaattccttcaccga |
212 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42253268 |
atgttcctaatattgagggttggcccatttcaaaagttgcggtccttttggttgatagtaagaaggaaaactgcttcttgcgttttaattccttcactga |
42253367 |
T |
|
| Q |
213 |
tagagcatggtcattgattgaaaaagatgttgatacttcagatcaaatttctgaagttacaagtgaaatcaaatctccatacaaaagaagaggagtaact |
312 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
42253368 |
tggagtatggtcattgattgaaaaagatgttgatacttcatatcaaattgctgaagttacaagtgagatcaaatctccatacaaaagaagaggagtaatt |
42253467 |
T |
|
| Q |
313 |
atgaagcgttcgaaagtcatattaaatgaagatcaactcttgcaagttggatattctgctgttaaggaagctggaagtaattatctttcttttacataaa |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42253468 |
atgaagcgttcgaaagtcatattaaatgaagatcaactcttgcaagttggatattctgctgttaaggaagctgcaagtaattatctttcttttacataaa |
42253567 |
T |
|
| Q |
413 |
tagtgcattagagcactcatagtgtacaccttttttatgttttctatatatcttgaggttcatatcaggacatgctttgtttttcgttattttctgtata |
512 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42253568 |
tattgcattagagcactcatagtgtacactttttttatgttttctatatatcttgaggttcatatcaggacatgctttgtttttcgttattttctgtata |
42253667 |
T |
|
| Q |
513 |
gtaaagacttttaacatgcattttttgactcataaaagtcgaatatgattcttatatagtgatttcatattttccttgtgaataggtgtcaatagtattg |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42253668 |
gtaaagacttttaacatgcattttttgactcataaaagtcgaatatgattcttatatagcgatttcatatttcccttgtgaataggtgtcaatagtattg |
42253767 |
T |
|
| Q |
613 |
atatgatgcttttgggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatga |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42253768 |
atatgatgcttttgggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatga |
42253842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 42258731 - 42259139
Alignment:
| Q |
13 |
gattatactgacctcgttgacgtggagcagcaactttcattaactgaaaatgcgatcatgagttcccatgatatatgcttatctttagatgcatcgaaaa |
112 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42258731 |
gattatgctgagctcgttgatgtggagcagcaactttcattaactgaaaaggcgatcatgagttcgcatgatatatgcttatctttagatgcatcgaaaa |
42258830 |
T |
|
| Q |
113 |
atgaacctaatatagagggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgcgttttaattccttcaccga |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
42258831 |
atgaacctaatatagagggttggcccatttcaaaagtcgcggtccttttggtcgatagtaagaaggaaaacagcttcttgcgttttaattccttcactga |
42258930 |
T |
|
| Q |
213 |
tagagcatggtcattgattgaaaaagatgttgatacttcagatcaaatttctgaagttacaagtgaaatcaaatctccatacaaaagaagaggagtaact |
312 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| | |
|
|
| T |
42258931 |
tggagtatggtcattgattgaaaaagatgttgatacttcagatcaaatttctgaagttacaagtgagatcaaatctccatacaaaagaagaagagtaatt |
42259030 |
T |
|
| Q |
313 |
atgaagcgttcgaaagtcatattaaatgaagatcaactcttgcaagttggatattctgctgttaaggaagctggaagtaattatctttcttttacataaa |
412 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||| | |||| ||||||| |
|
|
| T |
42259031 |
atgacgcgttcgaaagtcatattaaatgaagatcaactcttgcaagatggatattctgctattagcgaagctgcaagtaattatcctactttaacataaa |
42259130 |
T |
|
| Q |
413 |
tagtgcatt |
421 |
Q |
| |
|
| |||||| |
|
|
| T |
42259131 |
gattgcatt |
42259139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 42279297 - 42279704
Alignment:
| Q |
14 |
attatactgacctcgttgacgtggagcagcaactttcattaactgaaaatgcgatcatgagttcccatgatatatgcttatctttagatgcatcgaaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42279297 |
attatactgacctcgttgacgtggagcagcaactttcattaactgaaaatgtgatcatgagttcccatgatatatgcttatctatagatgcatcgaaaaa |
42279396 |
T |
|
| Q |
114 |
tgaacctaatatagagggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgcgttttaattccttcaccgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42279397 |
tgaacctaatatagagggttggcccatttcaaaagtcgcggtccttttggtcgatattaagaaggaaaactgcttcttgcgttttaattccttcactgat |
42279496 |
T |
|
| Q |
214 |
agagcatggtcattgattgaaaaagatgttgatacttcagatcaaatttctgaagttacaagtgaaatcaaatctccatacaaaagaagaggagtaacta |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| || |
|
|
| T |
42279497 |
ggagtatggtcattgattgaaaaagatgttgatacttcatatcaaatttttgaagttacaagtgagatcaaatctccatacaaaagaagaatagtaatta |
42279596 |
T |
|
| Q |
314 |
tgaagcgttcgaaagtcatattaaatgaagatcaactcttgcaagttggatattctgctgttaaggaagctggaagtaattatctttcttttacataaat |
413 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||||||| ||||||||||| | |||| ||||||| |
|
|
| T |
42279597 |
tgacacgttcgaaagtcatattaaatgaagattaactcttgcaagatggatattctgctattagcgaagctgcaagtaattatcctactttaacataaag |
42279696 |
T |
|
| Q |
414 |
agtgcatt |
421 |
Q |
| |
|
| |||||| |
|
|
| T |
42279697 |
attgcatt |
42279704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 28 - 423
Target Start/End: Original strand, 42267278 - 42267673
Alignment:
| Q |
28 |
gttgacgtggagcagcaactttcattaactgaaaatgcgatcatgagttcccatgatatatgcttatctttagatgcatcgaaaaatgaacctaatatag |
127 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||| || ||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
42267278 |
gttgacgcggagcagcaactttcattagcagaaaaagcaatcatgagtgcctatgatatatgcttatatttagatgcatcgaaaaatgatcctaatatag |
42267377 |
T |
|
| Q |
128 |
agggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgcgttttaattccttcaccgatagagcatggtcatt |
227 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||| |||||||||| || | || ||| ||||||||| |
|
|
| T |
42267378 |
agggttggcccatttcaaaagttgcagtccttttggttgataatgagaaggaaaactgcttcttgcattttaattccatccctcatggagtatggtcatt |
42267477 |
T |
|
| Q |
228 |
gattgaaaaagatgttgatacttcagatcaaatttctgaagttacaagtgaaatcaaatctccatacaaaagaagaggagtaactatgaagcgttcgaaa |
327 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
42267478 |
gattgaaaaagatgttgatacattagatcaaatttctgaagttacaagtgagatcaaatctccatgcaaaagaagaagagtaattatgaagcgttcgaaa |
42267577 |
T |
|
| Q |
328 |
gtcatattaaatgaagatcaactcttgcaagttggatattctgctgttaaggaagctggaagtaattatctttcttttacataaatagtgcattag |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| | | |||||||| |
|
|
| T |
42267578 |
gtcatattaaatgaagatcaactcttgcaagttggatattctgctgttaaggaaattgcgggtaattatccttcttttacatagagattgcattag |
42267673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 427 - 687
Target Start/End: Original strand, 42259180 - 42259437
Alignment:
| Q |
427 |
actcatagtgtacaccttttttatgttttctatatatcttgaggttcatatcaggacatgctttgttttt-cgttattttctgtatagtaaagactttta |
525 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||| | |||||||||||||| |||| ||||| |
|
|
| T |
42259180 |
actcatggtgtacacttttcttatgttttctgtacatcttg----tcatatcaggacatgctttgttttttctttattttctgtatattaaattgtttta |
42259275 |
T |
|
| Q |
526 |
acatgcattttttgactcataaaagtcgaatatgattcttatatagtgatttcatattttccttgtgaataggtgtcaatagtattgatatgatgctttt |
625 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42259276 |
acatgcattttttgactcataatagtcgaacatgattcttatataatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgctttt |
42259375 |
T |
|
| Q |
626 |
gggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatga |
687 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
42259376 |
gggaagttatacagtgtattcccagagcaaggagagggcagcttctcgcttttatataatga |
42259437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 427 - 687
Target Start/End: Original strand, 42279745 - 42280002
Alignment:
| Q |
427 |
actcatagtgtacaccttttttatgttttctatatatcttgaggttcatatcaggacatgctttgttttt-cgttattttctgtatagtaaagactttta |
525 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||| | |||||||||||||| |||| ||||| |
|
|
| T |
42279745 |
actcatggtgtacacttttcttatgttttctgtacatcttg----tcatatcaggacatgctttgttttttctttattttctgtatattaaattgtttta |
42279840 |
T |
|
| Q |
526 |
acatgcattttttgactcataaaagtcgaatatgattcttatatagtgatttcatattttccttgtgaataggtgtcaatagtattgatatgatgctttt |
625 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42279841 |
acatgtattttttgactcataatagtcgaacatgattcttataaaatgatttcatatttcccttgtgaataggtgtcaatattattgatatgatgctttt |
42279940 |
T |
|
| Q |
626 |
gggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatga |
687 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
42279941 |
gggaagttacactgtgtattcccagagcaaagagaggacagcgtttcgcttttatataatga |
42280002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 521 - 687
Target Start/End: Original strand, 42267813 - 42267979
Alignment:
| Q |
521 |
ttttaacatgcattttttgactcataaaagtcgaatatgattcttatatagtgatttcatattttccttgtgaataggtgtcaatagtattgatatgatg |
620 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| ||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267813 |
ttttaacatgcattttttgactcataatagttgaacatgattcttatgtaatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatg |
42267912 |
T |
|
| Q |
621 |
cttttgggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatga |
687 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267913 |
cttttgggaagttacactgtgcattcccagagcaaagagaggacagcttctcgcttttatataatga |
42267979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 42306761 - 42307014
Alignment:
| Q |
21 |
tgacctcgttgacgtggagcagcaactttcattaactgaaaatgcgatcatgagttcccatgatatatgcttatctttagatgcatcgaaaaatgaacct |
120 |
Q |
| |
|
|||||| ||||| ||||||||||| | |||||||| ||||| || ||| |||||||| |||||||||| | |||||| || || |||| || ||| |
|
|
| T |
42306761 |
tgaccttgttgatgtggagcagcagttgtcattaacagaaaaagcaatcgtgagttcctatgatatatgtacacttttagacgcgtcaaaaagtgttcct |
42306860 |
T |
|
| Q |
121 |
aatatagagggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgcgttttaattccttcaccgatagagcat |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||| | || ||| ||| | |
|
|
| T |
42306861 |
aatatagagggatggcccatttcaaaagttgccgtccttttggtcgatagtaagaaggagaactgcttcttgcattttggttctataactgatggagtac |
42306960 |
T |
|
| Q |
221 |
ggtcattgattgaaaaagatgttgatacttcagatcaaatttctgaagttacaa |
274 |
Q |
| |
|
|||||||||||||||||||||| ||||| || || || ||||||||||||||| |
|
|
| T |
42306961 |
ggtcattgattgaaaaagatgtggatacctccaataaagtttctgaagttacaa |
42307014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 42311607 - 42311856
Alignment:
| Q |
19 |
actgacctcgttgacgtggagcagcaactttcattaactgaaaatgcgatcatgagttcccatgatatatgcttatctttagatgcatcgaaaaatgaac |
118 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||| ||||||||| || |||||||||||| ||||||| | |
|
|
| T |
42311607 |
actgacctcgttgatgtggagcagcagctttcattaacagaaaaagcgatagcgagttcgtgtgatatatgtacatgtttagatgcatcaaaaaatgttc |
42311706 |
T |
|
| Q |
119 |
ctaatatagagggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgcgttttaattccttcaccgatagagc |
218 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||||| ||||||| ||||| ||||||| ||| |||||||| ||||||||| |||| ||| ||| | | |
|
|
| T |
42311707 |
caaatatagagggatggcccgtttcaaaagttgccatccttttagtcgacagtaagatggagaactgcttgttgcgtttttgttccaccactgatggggt |
42311806 |
T |
|
| Q |
219 |
atggtcattgattgaaaaagatgttgatacttcagatcaaatttctgaag |
268 |
Q |
| |
|
|||||| |||| ||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
42311807 |
atggtccgtgatcgaaaaagatgtgggttcttcagatcaaatttctgaag |
42311856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 574 - 687
Target Start/End: Original strand, 42307520 - 42307633
Alignment:
| Q |
574 |
atttcatattttccttgtgaataggtgtcaatagtattgatatgatgcttttgggaagttacaatgtgtattcccagagcaaagagaggacagcttctcg |
673 |
Q |
| |
|
||||| ||||| |||| |||| ||||||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||| |||| |||| || |
|
|
| T |
42307520 |
atttcttatttcccttatgaacaggtgtcaatagtatcgatattatgcttttggaaagttacactgtgtattcccagagcaaagagaagacatcttcacg |
42307619 |
T |
|
| Q |
674 |
cttttatataatga |
687 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42307620 |
cttttatataatga |
42307633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 596 - 687
Target Start/End: Original strand, 42312317 - 42312408
Alignment:
| Q |
596 |
aggtgtcaatagtattgatatgatgcttttgggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatga |
687 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
42312317 |
aggtgtcaatagtaatgatattatgcttttggaaagttacactgtgtattcccagcgcaaagagaagacagcttcacgcttttatataatga |
42312408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 42307108 - 42307173
Alignment:
| Q |
338 |
atgaagatcaactcttgcaagttggatattctgctgttaaggaagctggaagtaattatctttctt |
403 |
Q |
| |
|
||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
42307108 |
atgaagatcgaattttgcaagttggatattctgctgttaaggaagctgcgggtaattatccttctt |
42307173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 42307331 - 42307391
Alignment:
| Q |
455 |
tctatatatcttgaggttcatatcaggacatgctttgtttttcgttattttctgtatagta |
515 |
Q |
| |
|
||||||||| |||||||| ||||||| |||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
42307331 |
tctatatattttgaggttaatatcagaacatactttgttcttccttattttctgtatagta |
42307391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 42267712 - 42267765
Alignment:
| Q |
427 |
actcatagtgtacaccttttttatgttttctatatatcttgaggttcatatcag |
480 |
Q |
| |
|
|||||| |||||||| || |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
42267712 |
actcattgtgtacactttacttatgttttctataaatctttaggttcatatcag |
42267765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 42307024 - 42307052
Alignment:
| Q |
257 |
aaatttctgaagttacaagtgaaatcaaa |
285 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42307024 |
aaatttctgaagttacaagtgaaatcaaa |
42307052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 487567 - 487974
Alignment:
| Q |
14 |
attatactgacctcgttgacgtggagcagcaactttcattaactgaaaatgcgatcatgagttcccatgatatatgcttatctttagatgcatcgaaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
487567 |
attatactgacctcgttgacgtggagcagcaactttcattaactgaaaatgtgatcatgagttcccatgatatatgcttatctatagatgcatcgaaaaa |
487666 |
T |
|
| Q |
114 |
tgaacctaatatagagggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgcgttttaattccttcaccgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
487667 |
tgaacctaatatagagggttggcccatttcaaaagtcgcggtccttttggtcgatattaagaaggaaaactgcttcttgcgttttaattccttcactgat |
487766 |
T |
|
| Q |
214 |
agagcatggtcattgattgaaaaagatgttgatacttcagatcaaatttctgaagttacaagtgaaatcaaatctccatacaaaagaagaggagtaacta |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| || |
|
|
| T |
487767 |
ggagtatggtcattgattgaaaaagatgttgatacttcatatcaaatttttgaagttacaagtgagatcaaatctccatacaaaagaagaatagtaatta |
487866 |
T |
|
| Q |
314 |
tgaagcgttcgaaagtcatattaaatgaagatcaactcttgcaagttggatattctgctgttaaggaagctggaagtaattatctttcttttacataaat |
413 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||||||| ||||||||||| | |||| ||||||| |
|
|
| T |
487867 |
tgacacgttcgaaagtcatattaaatgaagattaactcttgcaagatggatattctgctattagcgaagctgcaagtaattatcctactttaacataaag |
487966 |
T |
|
| Q |
414 |
agtgcatt |
421 |
Q |
| |
|
| |||||| |
|
|
| T |
487967 |
attgcatt |
487974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 427 - 687
Target Start/End: Original strand, 488015 - 488272
Alignment:
| Q |
427 |
actcatagtgtacaccttttttatgttttctatatatcttgaggttcatatcaggacatgctttgttttt-cgttattttctgtatagtaaagactttta |
525 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||| | |||||||||||||| |||| ||||| |
|
|
| T |
488015 |
actcatggtgtacacttttcttatgttttctgtacatcttg----tcatatcaggacatgctttgttttttctttattttctgtatattaaattgtttta |
488110 |
T |
|
| Q |
526 |
acatgcattttttgactcataaaagtcgaatatgattcttatatagtgatttcatattttccttgtgaataggtgtcaatagtattgatatgatgctttt |
625 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
488111 |
acatgcattttttgactcataatagtcgaacatgattcttatataatgatttcatatttcccttgtgaataggtgtcaatagtattgatatgatgctttt |
488210 |
T |
|
| Q |
626 |
gggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatga |
687 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
488211 |
gggaagttatacagtgtattcccagagcaaggagagggcagcttctcgcttttatataatga |
488272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 28 - 276
Target Start/End: Complemental strand, 30713185 - 30712938
Alignment:
| Q |
28 |
gttgacgtggagcagcaactttcattaactgaaaatgcgatcatgagttcccatgatatatgcttatctttagatgcatcgaaaaatgaacctaatatag |
127 |
Q |
| |
|
||||||| ||| |||| || |||||||||||||| |||||||||||| |||||||||| | |||||||||| || | ||||||| ||||||| | |
|
|
| T |
30713185 |
gttgacgcagaggagcagctgtcattaactgaaaaacaaatcatgagttcctatgatatatgttcatctttagatccaacaaaaaatgttcctaatacaa |
30713086 |
T |
|
| Q |
128 |
agggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgcgttttaattccttcaccgatagagcatggtcatt |
227 |
Q |
| |
|
||| || |||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||| |||| ||||||| || || || |||||||||| |
|
|
| T |
30713085 |
aggatttgcccatttcaaaagttgcc-tccttttggttgatagcaagaaagaaaactgcttcttgaattttgattcctttgcccatggatcatggtcatt |
30712987 |
T |
|
| Q |
228 |
gattgaaaaagatgttgatacttcagatcaaatttctgaagttacaagt |
276 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
30712986 |
gattgaaaaagatgttgatacctcagaccaaattcttgaagttacaagt |
30712938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 25277996 - 25278093
Alignment:
| Q |
96 |
tttagatgcatcgaaaaatgaacctaatatagagggttggcccatttcaaaagttgcggtccttttggtcgatagtaagaaggaaaactgcttcttgc |
193 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||| |||||||| || |||||| | |||||||| |||| || |||||||| |||||||| |||| |
|
|
| T |
25277996 |
tttagatgcatcaaagaatgttcctaatatagaggggtggcccatatcgaaagtttctgtccttttaatcgacagcaagaaggagaactgctttttgc |
25278093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 686
Target Start/End: Original strand, 25278725 - 25278800
Alignment:
| Q |
611 |
tgatatgatgcttttgggaagttacaatgtgtattcccagagcaaagagaggacagcttctcgcttttatataatg |
686 |
Q |
| |
|
|||||| |||||||||||||| |||| | | ||||| || |||||||||| | |||||||||||||||||||||| |
|
|
| T |
25278725 |
tgatattatgcttttgggaagctacactatctattctcaaagcaaagagaaggaagcttctcgcttttatataatg |
25278800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University