View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8984_high_12 (Length: 425)

Name: NF8984_high_12
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8984_high_12
NF8984_high_12
[»] chr2 (1 HSPs)
chr2 (34-425)||(37796700-37797091)


Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 34 - 425
Target Start/End: Original strand, 37796700 - 37797091
Alignment:
Q  34 gaagaggtaaagatgagtgagaggttaataatttgagagataaagacataaagtggaaacaaagagtgtaggagggagagtagaaaatgattaaggtcct 133  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37796700 gaagaggtaaagatgagtgagaggttaacaatttgagagataaagacataaagtggaaacaaagagtgtaggagggagagtagaaaatgattaaggtcct 37796799  T
Q  134 tagacaagaaaccctttgttgtgaaaacaaaaagtcgattgcttattgtaccagaagtctgtatggcaaggccaaaaagagggaagtgaatttagtgccg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37796800 tagacaagaaaccctttgttgtgaaaacaaaaagtcgattgcttattgtaccagaagtctgtatggcaaggccaaaaagagggaagtggatttagtgccg 37796899  T
Q  234 taaaaaacaacacaatttttattttaattattcgatgagtttgacaaagttacaataataccgtctaataaagagatatttatatttccactgatgcact 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37796900 taaaaaacaacacaatttttattttaattattcgatgagtttgacaaagttacaataataccgtctaataaagagatatttatatttccactgatgcact 37796999  T
Q  334 tatttagaagaatcttgatcttcattttcctcacccggggcatttcttttatcatttacttcttcctcgtatggtgtttcactatagggtgt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37797000 tatttagaagaatcttgatcttcattttcctcacccggggcatttcttttatcatttacttcttcctcgtatggtgtttcactatagggtgt 37797091  T

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