View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_high_25 (Length: 260)
Name: NF8984_high_25
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_high_25 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 3538372 - 3538168
Alignment:
| Q |
56 |
cccagaaacaatttccatcaaatataaagaattaattcataatctgaaaaattcaaattatctacaacaatccaagcttctccttcttaggttgaataag |
155 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3538372 |
cccagaaacaatttccatcaaatacaaagaattaattaataatctgaaaaatccaaatcatcaacaacaatccaagcttctccttcttaggttgaataag |
3538273 |
T |
|
| Q |
156 |
ctgatttacgttttgcagaattccttgtgtgaaagaacgccaaacgctcttgtacgtatgttgttgtgatctcatcctcttcttcctccaccgtgacttc |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3538272 |
ctgatttacgttttgcagaattccttgtgtgaaagaacgccaaacgctcctgtacggatgttgttgtgatctcatcctcttcttcctccaccgtgacttc |
3538173 |
T |
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| Q |
256 |
agcac |
260 |
Q |
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||||| |
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| T |
3538172 |
agcac |
3538168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 9661139 - 9661235
Alignment:
| Q |
56 |
cccagaaacaatttccatcaaatataaagaattaattcataatctgaaaaattcaaattatctacaacaatccaagcttctccttcttaggttgaat |
152 |
Q |
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|||| |||||||||||||||||| ||| | |||||||||||| || ||||| ||||| | |||| || ||||||||||||||||||||||||| |
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| T |
9661139 |
cccaaaaacaatttccatcaaattcaaatagttaattcataatatgcaaaatccaaatcaataacaataacacaagcttctccttcttaggttgaat |
9661235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 44553804 - 44553888
Alignment:
| Q |
58 |
cagaaacaatttccatcaaatataaagaattaattcataatctgaaaaattcaaattatctacaacaatccaagcttctccttcttag |
145 |
Q |
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| T |
44553804 |
cagaaacaatttccatcaaatccaaatagttaattcataatctacaaaatccaa---atcaacaacatcccaaacttctccttcttag |
44553888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 52087598 - 52087394
Alignment:
| Q |
56 |
cccagaaacaatttccatcaaatataaagaattaattcataatctgaaaaattcaaattatctacaacaatccaagcttctccttcttaggttgaataag |
155 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
52087598 |
cccataaacaatttccatcaaatacaaagaattaattcataatctgaaaaattcaaatcatcaacaactatccaagcttctccttcttaggttgaataag |
52087499 |
T |
|
| Q |
156 |
ctgatttacgttttgcagaattccttgtgtgaaagaacgccaaacgctcttgtacgtatgttgttgtgatctcatcctcttcttcctccaccgtgacttc |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087498 |
ctgatttacgttttgcagaattccttgtgtgaaagaacgccaaacgctcctgtatgtatgttgttgtgatctcatcctcttcttcctccaccgtgacttc |
52087399 |
T |
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| Q |
256 |
agcac |
260 |
Q |
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||||| |
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| T |
52087398 |
agcac |
52087394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 48493808 - 48493724
Alignment:
| Q |
58 |
cagaaacaatttccatcaaatataaagaattaattcataatctgaaaaattcaaattatctacaacaatccaagcttctccttcttag |
145 |
Q |
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||||||||||||||||||||| ||| | |||||||||||||| ||||| ||| ||| |||||| |||| |||||||||||||| |
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| T |
48493808 |
cagaaacaatttccatcaaatccaaatagttaattcataatctacaaaatccaa---atcaacaacatcccaaacttctccttcttag |
48493724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 22168323 - 22168375
Alignment:
| Q |
87 |
ttaattcataatctgaaaaattcaaattatctacaacaatccaagcttctcct |
139 |
Q |
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||||||||||||||| ||||| ||||| ||| ||||||| |||||||||||| |
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| T |
22168323 |
ttaattcataatctgcaaaatccaaatcatcaacaacaactcaagcttctcct |
22168375 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 10978974 - 10978770
Alignment:
| Q |
56 |
cccagaaacaatttccatcaaatataaagaattaattcataatctgaaaaattcaaattatctacaacaatccaagcttctccttcttaggttgaataag |
155 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||| |||||||||| |||||||||||||||| ||| ||||| |
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| T |
10978974 |
cccataaacaatttccatcaaatacaaagaattaattcataatatgaaaaatccaaatcatcaacaacaatcctagcttctccttcttagattggataag |
10978875 |
T |
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| Q |
156 |
ctgatttacgttttgcagaattccttgtgtgaaagaacgccaaacgctcttgtacgtatgttgttgtgatctcatcctcttcttcctccaccgtgacttc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
10978874 |
ttgatttacgttttgcagaattccttgtgtgaaagaacgccaaacgctcctgtacatatgttgttgtgacctcatcctcttcttcctccactgtgacttc |
10978775 |
T |
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| Q |
256 |
agcac |
260 |
Q |
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||||| |
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| T |
10978774 |
agcac |
10978770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 41743270 - 41743174
Alignment:
| Q |
56 |
cccagaaacaatttccatcaaatataaagaattaattcataatctgaaaaattcaaattatctacaacaatccaagcttctccttcttaggttgaat |
152 |
Q |
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|||| |||||| ||||||||||| ||| | |||||||||||| || ||||| ||||| | |||| || |||||||||||||||||||||||||| |
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| T |
41743270 |
cccaaaaacaaattccatcaaatccaaatagttaattcataatatgcaaaatccaaatcaataacaataacccaagcttctccttcttaggttgaat |
41743174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 2420849 - 2420797
Alignment:
| Q |
87 |
ttaattcataatctgaaaaattcaaattatctacaacaatccaagcttctcct |
139 |
Q |
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||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||| |
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| T |
2420849 |
ttaattcataatctgcaaaatccaaatcatcaacaacaacccaagcttctcct |
2420797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 31871927 - 31871979
Alignment:
| Q |
87 |
ttaattcataatctgaaaaattcaaattatctacaacaatccaagcttctcct |
139 |
Q |
| |
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||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||| |
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| T |
31871927 |
ttaattcataatctgcaaaatccaaatcatcaacaacaacccaagcttctcct |
31871979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 13532163 - 13532259
Alignment:
| Q |
56 |
cccagaaacaatttccatcaaatataaagaattaattcataatctgaaaaattcaaattatctacaacaatccaagcttctccttcttaggttgaat |
152 |
Q |
| |
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|||| |||||||||||||||||| ||| | |||||||||||| || ||||| ||||| | |||| || ||||||||||||||||||||||||| |
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| T |
13532163 |
cccaaaaacaatttccatcaaattcaaatagttaattcataatatgcaaaatccaaatcaataacaataacacaagcttctccttcttaggttgaat |
13532259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 2167072 - 2167020
Alignment:
| Q |
87 |
ttaattcataatctgaaaaattcaaattatctacaacaatccaagcttctcct |
139 |
Q |
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||||||||||||||| ||||| ||||| ||| ||||||| |||| |||||||| |
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| T |
2167072 |
ttaattcataatctgcaaaatccaaatcatcaacaacaacccaaacttctcct |
2167020 |
T |
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