View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8984_high_3 (Length: 662)

Name: NF8984_high_3
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8984_high_3
NF8984_high_3
[»] chr4 (1 HSPs)
chr4 (18-662)||(32726217-32726861)


Alignment Details
Target: chr4 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Original strand, 32726217 - 32726861
Alignment:
Q  18 atgtataaacactgttattttcctcattatggaccatactaagtgttgtgcgacttctttgaatattcccttaattatgtagattattcattatgaaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726217 atgtataaacactgttattttcctcattatggaccatactaagtgttgtgcgacttctttgaatattcccttaattatgtagattattcattatgaaagg 32726316  T
Q  118 tgttattattttacctatgacataaatggagtcacagtagttaatgtcgttgggaacccaggctgcttctgtgtatgcgaatggagatgatgactcaata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726317 tgttattattttacctatgacataaatggagtcacagtagttagtgtcgttgggaacccaggctgcttctgtgtatgcgaatggagatgatgactcaata 32726416  T
Q  218 tttggaattagttagtctaggagtcgggtatcatggagttaaaattttgtatttttattgttctgatggtgtaatttatataacatgatatcaagtatga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  32726417 tttggaattagttagtctaggagtcgggtatcatggagttaaaattttgtatttttattgttctaatggtgtaatttatataacataatatcaaggatga 32726516  T
Q  318 tttaaatattatttttaacatcaagtaaacgcatagtttagattcaagttattctatgcaaaacatgtttactatgacaacctttgcacacttgatttat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  32726517 tttaaatattatttttaacatcaagtaaacgcatagtttagattcaagttattctatgcaaaacatgtttactacgacaacctttgcacac-tgatttat 32726615  T
Q  418 cc-ttttttccttttgtagtgatgtcttccgtgaaggtttgcattttttgtttgttgaccgtcatcatcggggtcattgttgacctgatggtgaggtcta 516  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  32726616 cctttttttccttttgtagtgatgtcttccgtgaaggtttgcattttttgtttgttgaccgtcatcatcggggtcattgttgacccgatggtgaggttta 32726715  T
Q  517 cttatcccccgccagcttcgagtgatccagcatcgccatcgacctggccgccgaaggtctcgtatttcatattcggttttgccggacttctgtgtttctt 616  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726716 cttatcccccgccaacttcgagtgatccagcatcgccatcgacctagccgccgaaggtctcgtatttcatattcggttttgccggacttctgtgtttctt 32726815  T
Q  617 gttggctttggttgacgttgtggttcgttttgttcgttggatgagg 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32726816 gttggctttggttgacgttgtggttcgttttgttcgttggatgagg 32726861  T

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