View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_11 (Length: 654)
Name: NF8984_low_11
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 268 - 637
Target Start/End: Original strand, 34860561 - 34860930
Alignment:
| Q |
268 |
gttagatgcaagatttttcttgaaaaaattctattcatttagacatatttacgatttcatgaatcatgcagactcagcacctctcatttcttctgtgatt |
367 |
Q |
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| T |
34860561 |
gttagatgcaagatttttcttgaaaaaattctattcatttagacatatttacgatttcatgaatcatgcagactcggtacctctcatttcttctgtgatt |
34860660 |
T |
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| Q |
368 |
tctgcatttgcaactgctacttttgggctgacatcgattgctgcgggcctgctaactatctcaactgcaagccttcaatctgttgatacattcacgagat |
467 |
Q |
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| T |
34860661 |
tctgcatttgcaactgctacttttgggctgacatcgattgctgcgggcctgctaactatctcaactgcaagccttcaatctgttgatacattcacgagat |
34860760 |
T |
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| Q |
468 |
cgtcttctttcttgattgttgatccagcaaggaatctatttgtaagatatctatagcatatatatatgagtgtttaacatttacacaaactaccaaaata |
567 |
Q |
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| T |
34860761 |
cgtcttctttcttgatcgttgatccagcaaggaatctatttgtaagatatctatagcatatatatatgagtgtttaacatttacacaaactaccaaaata |
34860860 |
T |
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| Q |
568 |
ccttacgttcttgtattgataatagagagaataccacattgatgaggttattttttgttaaccatgcaga |
637 |
Q |
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| T |
34860861 |
ccttacgttcttgtattgataatagagagaataccacattgatgaggttattttttgttaaccatgcaga |
34860930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 34860313 - 34860496
Alignment:
| Q |
20 |
ttttctcttgcaacgttttatttctgaccagctttcacaaactaaaatggagcacatacattgttgagctacaagcagatgatgattttgtagttgtcag |
119 |
Q |
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| T |
34860313 |
ttttctcttgcaacgttttatttctgaccagctttcacaaactaaaatggagcacatacattgttgagctacaagcagatgatgattttgtatttgtcag |
34860412 |
T |
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| Q |
120 |
tgttccagagaacgtaactcgtgatgttgctggaaacaaaaatctagcttccaatgttctacaagtgaggcactgtaagattcc |
203 |
Q |
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| T |
34860413 |
tgttccagagaacgtaactcatgatgttgctggaaacaaaaatctagcttccaatgttctacaagtgaggcactgtaagattcc |
34860496 |
T |
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