View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_14 (Length: 592)
Name: NF8984_low_14
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 11603310 - 11603893
Alignment:
| Q |
1 |
ctaagcgaccgctcaagtataactgctgaagatagcgaggagggtttgaaatgtcatgaatatcgattacctcgtcttcttctatagcaaatatggagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603310 |
ctaagcgaccgctcaagtataactgctgaagatagcgaggagggtttgaaatgtcatgaatatcgattacctcgtcttcttctatagcaaatatggagag |
11603409 |
T |
|
| Q |
101 |
tgacctaagatggatcatcttctcaatggatgaacacaaagcagcaccatcttctttcctcatttttcttatgcctagcctcctaagttgagtaagtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11603410 |
tgacctaagatggatcatcttctcaatggatgaacacaaagcagcaccatcttctttcctcatttttcttatgcctagcctcctaagttgagtaagtttt |
11603509 |
T |
|
| Q |
201 |
cctagctcaaccatcaaggctgcacttccttgatctacctctatgaaacaaagcttctgcaatgatagcatgtttcctataggtgcagccaccttgaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603510 |
cctagctcaaccatcaaggctgcacttccttgatctacctctatgaaacaaagcttctgcaatgatagcatgtttcctataggtgcagccaccttgaagc |
11603609 |
T |
|
| Q |
301 |
catgccttgagtggaatttagcataagattcaatctcgtaacgatacacgaggagatggcgtaaccgtttcagctccgcaatttcaacaggcagttcagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11603610 |
catgccttgagtggaatttagcataagattcaatctcgtaacgatacacgaggagatggcgtaaccgtttcagctccgcaatttcaacaggcagttcagt |
11603709 |
T |
|
| Q |
401 |
tacagacgtgtgcttaagatccaatgtctcaaggttttgcagcctcttaatggaacctggaatatttttcacctttgtattcttcaaacttagatacttc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11603710 |
tacagacgtgtgcttaagatccaatgtctcaaggttttgcagcctcttaatggaacctggaatatttttcacctttgtattcttcaaacttagatacttc |
11603809 |
T |
|
| Q |
501 |
agaaggtaaaggttgacaatttcagcaggaaaatcatccaaaggtgcatcctgcaagtctagtacattgagaaattgaacacca |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11603810 |
agaaggtaaaggttgacaatttcagcaggaaaatcatccaaaggtgcatcctgcaagtctagtacattgagaaattgaacacca |
11603893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 11624139 - 11623556
Alignment:
| Q |
1 |
ctaagcgaccgctcaagtataactgctgaagatagcgaggagggtttgaaatgtcatgaatatcgattacctcgtcttcttctatagcaaatatggagag |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||| || ||||||| ||||||||||||| |||||| |||||||| ||| |||| || |
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|
| T |
11624139 |
ctaaacgaccgctcaagtatagctgctgaagatactgaggaggcttcgaaatgttgtgaatatcgattatctcgtcatcttctattgcagttatgttaag |
11624040 |
T |
|
| Q |
101 |
tgacctaagatggatcatcttctcaatggatgaacacaaagcagcaccatcttctttcctcatttttcttatgcctagcctcctaagttgagtaagtttt |
200 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
11624039 |
tgatctaagattgatcatcttctcaatagatgaacacaaagcagcaccgtcttctttcctcatttttcttatgcctagcctcctaagttgagtgagtttt |
11623940 |
T |
|
| Q |
201 |
cctagctcaaccatcaaggctgcacttccttgatctacctctatgaaacaaagcttctgcaatgatagcatgtttcctataggtgcagccaccttgaagc |
300 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11623939 |
cctaactctaccatcaaggctctgcttccttgatctacctctatgaaacaaagcttttgcaatgatagcatgtttcctataggtgcagccaccttgaagc |
11623840 |
T |
|
| Q |
301 |
catgccttgagtggaatttagcataagattcaatctcgtaacgatacacgaggagatggcgtaaccgtttcagctccgcaatttcaacaggcagttcagt |
400 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||| || || |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| || |
|
|
| T |
11623839 |
catgccttgagtggaaatgagcataggattcaatttcatagcgatacaccaggagatggcgtaaccgtttcagctccgcaacttcaacaggcaattccgt |
11623740 |
T |
|
| Q |
401 |
tacagacgtgtgcttaagatccaatgtctcaaggttttgcagcctcttaatggaacctggaatatttttcacctttgtattcttcaaacttagatacttc |
500 |
Q |
| |
|
||| | |||||||||||||||||||| || | || || |||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
11623739 |
gacataagtgtgcttaagatccaatgtttccaagtatttcagcttcttaattgaacctggaatgcttttcacctttgtatttttcaaacttagatgcttc |
11623640 |
T |
|
| Q |
501 |
agaaggtaaaggttgacaatttcagcaggaaaatcatccaaaggtgcatcctgcaagtctagtacattgagaaattgaacacca |
584 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
11623639 |
agaaggtaaaggtttacaatttcaacaggaaaatcctccaaaggtgcatcctgcaagtctagtacattgagcaacttaacacca |
11623556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 11642645 - 11642062
Alignment:
| Q |
1 |
ctaagcgaccgctcaagtataactgctgaagatagcgaggagggtttgaaatgtcatgaatatcgattacctcgtcttcttctatagcaaatatggagag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||| || |
|
|
| T |
11642645 |
ctaagcgtccgctcaagtataactgctgaagatagcgaggagggtttgaaatgtcatgaatatcgattacctcatcttcttcaattgcagttatggaaag |
11642546 |
T |
|
| Q |
101 |
tgacctaagatggatcatcttctcaatggatgaacacaaagcagcaccatcttctttcctcatttttcttatgcctagcctcctaagttgagtaagtttt |
200 |
Q |
| |
|
||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||| || |
|
|
| T |
11642545 |
tgatctaagattgatcatcttctcaatagatgaacacaaagcagcaccatcttctttcctcatttttctaatgcctagctttctaagttgagtgagtctt |
11642446 |
T |
|
| Q |
201 |
cctagctcaaccatcaaggctgcacttccttgatctacctctatgaaacaaagcttctgcaatgatagcatgtttcctataggtgcagccaccttgaagc |
300 |
Q |
| |
|
|||| ||| |||||||| ||| |||||||||||||||| |||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11642445 |
cctaactctaccatcaatgctccacttccttgatctacatctacgaaacaaagcttttgcaaagattgcatgtttcctataggtgcagccaccttgaagc |
11642346 |
T |
|
| Q |
301 |
catgccttgagtggaatttagcataagattcaatctcgtaacgatacacgaggagatggcgtaaccgtttcagctccgcaatttcaacaggcagttcagt |
400 |
Q |
| |
|
||| | |||||||||| | |||||| || ||||||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||| | ||| | |
|
|
| T |
11642345 |
cattctttgagtggaaatgagcataggactcaatcttgtagcgatacaccaggaggtggcgtaaccgtttcagctccgcaatttcaaaaggtaattccat |
11642246 |
T |
|
| Q |
401 |
tacagacgtgtgcttaagatccaatgtctcaaggttttgcagcctcttaatggaacctggaatatttttcacctttgtattcttcaaacttagatacttc |
500 |
Q |
| |
|
||| | ||||| |||||||||||||| || | || ||| ||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
11642245 |
gacacaagtgtgtttaagatccaatgtttccaagtattggagcttcttaattgaacttggaatgtttttcacctttgtattcttcaaacttagatgtttc |
11642146 |
T |
|
| Q |
501 |
agaaggtaaaggttgacaatttcagcaggaaaatcatccaaaggtgcatcctgcaagtctagtacattgagaaattgaacacca |
584 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
11642145 |
agaaggtaaaggttgataatttcaagaggaaaatcctccaaaggtgcatcctgcaagtctagtacattgagcaacttaacacca |
11642062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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