View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_17 (Length: 557)
Name: NF8984_low_17
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 193 - 540
Target Start/End: Complemental strand, 39533490 - 39533143
Alignment:
| Q |
193 |
gaaacgatacctcctcgtcgtaagaatggaatatggattgtacaacaagagaacaacctaacaacattatacggaaaatcatggaggtgactggaagaag |
292 |
Q |
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| T |
39533490 |
gaaacgatacctcctcgtcgtaagaatggaatatggattgtacaacaagacaacaacctcacaacattatacggaaaatcatggaggtgactggaagaag |
39533391 |
T |
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| Q |
293 |
aagatatagaatgataccgagttttctatccccgtgcatctgacatttaattcactaagagtaaagatccatatcacttcaaaaagtattaattattcac |
392 |
Q |
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| T |
39533390 |
aagatatagaatgataccgagttttctatccccgtgcatctgacatttaattcactaagagtaaagatccatatcacttcaaaaagtattaattattcac |
39533291 |
T |
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| Q |
393 |
ttatttaaattttcaaatacatatgcacggaaaggtgcatcaaatacatgctacacttgcacctgcaccgcagctggtggcgatagagtgaaattgttga |
492 |
Q |
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| T |
39533290 |
ttatttaaattttaaaatacatatgcacggaaaggtacatcaaatacatgctacacttgcacctgcaccgcagctggtggcgatagagtgaaattgttga |
39533191 |
T |
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| Q |
493 |
gacactttgtagcagtagtcactagagccaccatgttaggtggtgatt |
540 |
Q |
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| T |
39533190 |
gacactttgtagcagtggtcactagagccaccatgttaggtggtgatt |
39533143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 39533676 - 39533562
Alignment:
| Q |
7 |
gagaagcagagaacacaagattgtcagatatttgctaaaagaacaatagataatggaatagaacgttggaatttctgaaaatggattcgttggattgact |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39533676 |
gagaagcaaagaacacaagattgtcagatatttgctaaaagaacaatagataatggaatagaacgttggaatttctgaaaatggattcgttggattgact |
39533577 |
T |
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| Q |
107 |
ttacgattccgattc |
121 |
Q |
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| T |
39533576 |
ttacgattccgattc |
39533562 |
T |
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