View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_19 (Length: 504)
Name: NF8984_low_19
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 333 - 486
Target Start/End: Original strand, 54282824 - 54282977
Alignment:
| Q |
333 |
gttcataatattgcatatttttcattgatatttgcatcaatgaaagtctaaatatgttggagagagtggcatctctggtatgacaggtttgggcggcgcg |
432 |
Q |
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| T |
54282824 |
gttcataatattgcatatttttcattgatatttgcatcagtgaaagtctaaatatgttggagagagtggcatctctggtatgacaggtttgggcggcgcg |
54282923 |
T |
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| Q |
433 |
taataatttggtgtggaacgatgttcgggcatcgtcgaccagcattgaatgaca |
486 |
Q |
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| T |
54282924 |
taataatttggtgtggaacgatgttcgggcatcgtcgaccagcattgaatgaca |
54282977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 189 - 333
Target Start/End: Original strand, 54282652 - 54282796
Alignment:
| Q |
189 |
gtgtgccgacacgtgtcatgctagctcaaagacacatccaatgtctcttacattgtccttggtgcggagataggttgatgatgcttgacatgcttttgca |
288 |
Q |
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| T |
54282652 |
gtgtgccgacacgtgtcatgctagctcaaagacacatccaatgtctcttacattgtccttggtgcggagataggttgatgatgcttgacatgcttttgca |
54282751 |
T |
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| Q |
289 |
ggatgtaatatggtcaaggaaagttggttccttgttggttcatcg |
333 |
Q |
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| T |
54282752 |
ggatgtaatatggtcaaggaaagttggttccttgttggttcatcg |
54282796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 54282574 - 54282650
Alignment:
| Q |
47 |
ctagctactcatctgtttgattcagtccaagaggacattattccatcgattcaaatctcatctgttaggtgactgga |
123 |
Q |
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| T |
54282574 |
ctagctactcatctgtttgattcagtccaagaggacattattccatcgattcaaatctcatctgttaggtgactgga |
54282650 |
T |
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