View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8984_low_2 (Length: 1161)
Name: NF8984_low_2
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_2 |
 | |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 1089; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1089; E-Value: 0
Query Start/End: Original strand, 17 - 1145
Target Start/End: Original strand, 486399 - 487527
Alignment:
| Q |
17 |
aaggaggttttcctggttggccaagcattacagattcattcatcaacatcaaaacaacagaagacatggttggcctatcaaatgcatcttcttgaacaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
486399 |
aaggaggttttcctggttggccaagcattacagattcattcatcaacatcaaaacaacagaagacatggttggcctatcaaatgcatcttcttgaacaca |
486498 |
T |
|
| Q |
117 |
taacagtccaatattcatgtatctcaaaaactggtctccagggcataataataatggatcccttaattccaatccctttccatcattccatagatgccat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
486499 |
taacagtccaatattcatgtatctcaaaaactggtctccagggcatagtaataatggatcccttaattccaatccctttccatcattccatagatgccat |
486598 |
T |
|
| Q |
217 |
gcctgaataatgattaatgaattaattttatcaatggtactcatgtagtagattgagattacagacacttacatatgctagaaggctaggagtggttttg |
316 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
486599 |
gcctgaataatgattaatgaattaatgtgatcaatggtactcatgtaatagattgagattacagacacttacatatgctagaaggctaggagtggttttg |
486698 |
T |
|
| Q |
317 |
gagtaacagaaacccgcgttacgtatccctgtaatgatctcaagcaatagtactccaaagccaaaaacatcagattttatggaatatagaccctccattg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
486699 |
gagtaacagaaacccgcgttacgtatccctgtaatgatctcaagcaatagtactccaaagccaaaaacatcagattttatggaatatagaccctccattg |
486798 |
T |
|
| Q |
417 |
catactccggagccatatatccactacaaaatgggtagtgttaagcatgtatacatatgcaaaaggaaaaatgttcatggaaggtactaggtgcttacta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
486799 |
catactccggagccatatatccactacaaaatgggtagtgttaagcatgtatacatatgcaaaaggaaaaatgttcatggaaggtactaggtgcttacta |
486898 |
T |
|
| Q |
517 |
tgtgccaactattgtagtagtgttagcttcaccttcacttcctgcaaatattctggccattccaaagtctgaaatctttggcttcatgtcattgtccaat |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
486899 |
tgtgccaactattgtagtagtgttagcttcaccttcacttcctgcaaatattctggccattccaaagtctgaaatctttgggttcatgtcattgtccaat |
486998 |
T |
|
| Q |
617 |
aacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaagaattccccttgctattccatttattatatcaagcc |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
486999 |
aacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaagaattccccttgctattccatttattatatcaagcc |
487098 |
T |
|
| Q |
717 |
gcttcgtccaatccaactgtgcatgttgttctggatcaataaaaatgtaaatgtgaaatgacctaaaacttgtagaatgaatgaatgttgcaatcaattt |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
487099 |
gcttcgtccaatccaactgtgcatgttgttctggatcaataaaaatgtaaatgtgaaatgacctaaaacttgtagaatgaatgaatgttgcaatcaattt |
487198 |
T |
|
| Q |
817 |
attcatcaaatactaggtctagcacaactggttgatgcacaatatgttggtgaatgttgtaaatataggagtactagtttgaatcttactcaaaaataaa |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
487199 |
attcatcaaatactaggtctagcacaactggttgattcacaatatgtcggtgaatgttgtaaatataggagtactagtttgattcttactcaaaaataaa |
487298 |
T |
|
| Q |
917 |
taccataccatccttaagaacgacaaaaatttggaatatactacttaccgaaaaggacaacatcaagactaccattgggcaaatattcatatacaagaag |
1016 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
487299 |
taccataccatccttaagaacgacaaaaatttggaatatactacttaccgaaaaggacaacatcaagactaccattgggcaaatattcatatacaagaag |
487398 |
T |
|
| Q |
1017 |
cttctcttctccatccacacaaaatcccaaaagttttacaagatttttgtgttgaagtttcaatatcagcattacctcgttaatgaactcttctgagccc |
1116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
487399 |
cttctcttctccatccacacaaaatcccaaaagttttacaagatttttgtgttgaagtttcaatatcagcataacctcgttaatgaactcttccgagccc |
487498 |
T |
|
| Q |
1117 |
tgctcagagcaaattgagagccttttgat |
1145 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
487499 |
tgctcagagcaaattgagagccttttgat |
487527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 566 - 683
Target Start/End: Original strand, 22689341 - 22689458
Alignment:
| Q |
566 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
665 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||| |||||||| | ||| | ||| ||||| |||||||| |||||||| ||| | | |||||| |
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|
| T |
22689341 |
attctagccatgccaaaatctgaaatctttggattcatatcattgtctactaaaatattgcttgcctttagatccctatgtatgattcttaatatagaat |
22689440 |
T |
|
| Q |
666 |
cttcatgaagataaagaa |
683 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
22689441 |
cttgatgaagataaagaa |
22689458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 617 - 679
Target Start/End: Original strand, 40126025 - 40126087
Alignment:
| Q |
617 |
aacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataa |
679 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||| |||| || ||| || ||||||||||||||| |
|
|
| T |
40126025 |
aacacattacttgcctttatatccctatgtatgattttaattcttgactcttcatgaagataa |
40126087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 566 - 687
Target Start/End: Complemental strand, 28433242 - 28433121
Alignment:
| Q |
566 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
665 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || | ||| |||||||| | ||| | ||||||||| ||||||||||| ||||| || | |||||||| |
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|
| T |
28433242 |
attctagccatgccaaaatctgaaattttaggatccatttcattgtctagtaaaatattacttgcctttagatctctgtgtatgatccttaatctagaat |
28433143 |
T |
|
| Q |
666 |
cttcatgaagataaagaattcc |
687 |
Q |
| |
|
||| ||||||||| ||||||| |
|
|
| T |
28433142 |
cttgatgaagatattgaattcc |
28433121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 566 - 683
Target Start/End: Original strand, 8284 - 8401
Alignment:
| Q |
566 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
665 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || ||||| |||| ||||||||| | |||||| |||| |||||||| ||||| ||| | | ||| |||| |
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|
| T |
8284 |
attctagccatgccaaaatctgaaattttgggattcatatcatcgtccaataaaatattactcactttcagatctctgtgtatgattcgtaatcttgaat |
8383 |
T |
|
| Q |
666 |
cttcatgaagataaagaa |
683 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
8384 |
cttgatgaagataaagaa |
8401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 578 - 680
Target Start/End: Complemental strand, 1077416 - 1077314
Alignment:
| Q |
578 |
ccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagat |
677 |
Q |
| |
|
||||| ||||| || ||||| ||||| |||||||| ||||| | |||||||| ||||||||||| |||||| || | ||||||||||| |||||||| |
|
|
| T |
1077416 |
ccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgatgaagat |
1077317 |
T |
|
| Q |
678 |
aaa |
680 |
Q |
| |
|
||| |
|
|
| T |
1077316 |
aaa |
1077314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 620 - 678
Target Start/End: Original strand, 4548064 - 4548122
Alignment:
| Q |
620 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagata |
678 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | ||||||||| |||||||||||||| |
|
|
| T |
4548064 |
acattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaagata |
4548122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 620 - 675
Target Start/End: Complemental strand, 3080467 - 3080412
Alignment:
| Q |
620 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaag |
675 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | ||||||||| ||||||||||| |
|
|
| T |
3080467 |
acattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaag |
3080412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 620 - 678
Target Start/End: Complemental strand, 3094904 - 3094846
Alignment:
| Q |
620 |
acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagata |
678 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | |||||||| |||||||||||||| |
|
|
| T |
3094904 |
acattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagata |
3094846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 680
Target Start/End: Complemental strand, 1050492 - 1050411
Alignment:
| Q |
599 |
ttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaa |
680 |
Q |
| |
|
||||| |||||||| ||||| | |||||||| ||||||||||| |||||| || | ||||||||||| ||||||||||| |
|
|
| T |
1050492 |
ttcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatccttaatctagaatcttgatgaagataaa |
1050411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 680
Target Start/End: Complemental strand, 1091235 - 1091154
Alignment:
| Q |
599 |
ttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagataaa |
680 |
Q |
| |
|
||||| |||||||| ||||| | |||||||| ||||||||||| |||||| || | ||||||||||| ||||||||||| |
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|
| T |
1091235 |
ttcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgatgaagataaa |
1091154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 36290843 - 36290782
Alignment:
| Q |
383 |
acatcagattttatggaatatagaccctccattgcatactccggagccatatatccactaca |
444 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||| || || |||| ||||||||||||||| |
|
|
| T |
36290843 |
acatcagatttgactgaaaatagaccctccattgcgtattctggagacatatatccactaca |
36290782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 566 - 687
Target Start/End: Complemental strand, 47584404 - 47584283
Alignment:
| Q |
566 |
attctggccattccaaagtctgaaatctttggcttcatgtcattgtccaataacacattacttgcttttagatctctatgtattatttgaagtctagaat |
665 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| ||||||| | | || ||||| ||||| || | ||| ||||| | ||||||||||| || | ||||| |
|
|
| T |
47584404 |
attctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaat |
47584305 |
T |
|
| Q |
666 |
cttcatgaagataaagaattcc |
687 |
Q |
| |
|
||||||| || ||||||||||| |
|
|
| T |
47584304 |
cttcatggaggtaaagaattcc |
47584283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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