View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8984_low_21 (Length: 496)

Name: NF8984_low_21
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8984_low_21
NF8984_low_21
[»] chr8 (25 HSPs)
chr8 (20-491)||(36211690-36212160)
chr8 (112-491)||(36190254-36190632)
chr8 (69-363)||(36197803-36198097)
chr8 (258-381)||(36209326-36209450)
chr8 (43-114)||(36190976-36191055)
chr8 (120-182)||(36201795-36201857)
chr8 (339-408)||(36215472-36215541)
chr8 (266-381)||(36196194-36196310)
chr8 (110-198)||(36209518-36209606)
chr8 (232-291)||(36215577-36215637)
chr8 (440-491)||(36211060-36211111)
chr8 (117-198)||(36188074-36188155)
chr8 (129-202)||(36214273-36214346)
chr8 (256-419)||(36199612-36199776)
chr8 (117-180)||(36184152-36184215)
chr8 (254-313)||(36208641-36208700)
chr8 (440-491)||(36211219-36211270)
chr8 (440-491)||(36211378-36211429)
chr8 (440-491)||(36211537-36211588)
chr8 (440-474)||(36189632-36189666)
chr8 (440-474)||(36189797-36189831)
chr8 (440-474)||(36189962-36189996)
chr8 (440-474)||(36210918-36210952)
chr8 (110-170)||(36200331-36200392)
chr8 (110-198)||(36196395-36196483)


Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Complemental strand, 36212160 - 36211690
Alignment:
Q  20 gccagtagttgtatggacaacatacatggctgttaaatcattttttaagggtgagtttacttaaccacttaggttttggttatgatgttgttgtagttgt 119  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36212160 gccagtagttgtatgggcaacatacatggctgttaaatcattttttaagggtgagtttacttaaccacttaggttttggttatgatgttgttgtagttgt 36212061  T
Q  120 tttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgtgtaaatggaaggcctttttgc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36212060 tttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgtgtaaatggaaggcctttttgc 36211961  T
Q  220 acttaactgcttaggttttgtcattgttctgtagaaattccttgggatacaagttttataacatagtagtctatttggctaatgtcatttgatcctatcc 319  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  36211960 acttaactgcttaggttttgtcattgctctgtagaaattccttggaatacaagttttataacatagtactct-tttggctaatgtcatttgatcctatcc 36211862  T
Q  320 aaaatctcttaaacattatcattatgttttagatgatagaccctgtagcttgatgtttggctcatgtcaaatttctattttaagtggagacaggaaattt 419  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36211861 aaaatctcttaaacagtatcattatgttttagatgatagaccctgtagcttgatgtttggctcatgtcaaatttctattttaagtggagacaggaaattt 36211762  T
Q  420 taacttttaattcctaatccaattgtggtgttgtaactcccattataggccatgggagcctgcatttcatct 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36211761 taacttttaattcctaatccaattgtggtgttgtaactcccattataggccatgggagcctgcatttcatct 36211690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 112 - 491
Target Start/End: Complemental strand, 36190632 - 36190254
Alignment:
Q  112 gtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgtgtaaatggaaggc 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36190632 gtagttgttttattttcaaagtttaatttaaaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgtgtaaatggaaggc 36190533  T
Q  212 ctttttgcacttaactgcttaggttttgtcattgttctgtagaaattccttgggatacaagttttataacatagtagtctatttggctaatgtcatttga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36190532 ctttttgcacttaactgcttaggttttgtcattgttctgtagaaatttcttgggatacaagttttataacatagtagtct-tttggctaatgtcatttga 36190434  T
Q  312 tcctatccaaaatctcttaaacattatcattatgttttagatgatagaccctgtagcttgatgtttggctcatgtcaaatttctattttaagtggagaca 411  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36190433 tcctatccaaaatctcttaaatagtatcattatgttttagatgatagaccctgtggcttgatgtttggctcatgtcaaatttctattttaagtggagaca 36190334  T
Q  412 ggaaattttaacttttaattcctaatccaattgtggtgttgtaactcccattataggccatgggagcctgcatttcatct 491  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36190333 agaaattttaacttttaattcctaattcaattgtggtgttgtaactcccattataggccatgggagcctgcatttcatct 36190254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 69 - 363
Target Start/End: Complemental strand, 36198097 - 36197803
Alignment:
Q  69 ggtgagtttacttaaccacttaggttttggttatgatgttgttgtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgta 168  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||||| ||||| || ||||||||||||||| |||| ||    
T  36198097 ggtgagtttacttaaccacttagattttggtt-tgatgctgtagtagttgttttattttcaaagtttcatttataaatttggatattgatctggagttta 36197999  T
Q  169 aggctatgttttaatatgataagtaattgtgtaaatggaaggcctttttgcacttaactgcttaggttttgtcattgttctgtagaaattccttgggata 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  36197998 aggctatgttttaatatgataagtaattgtgtaaatggaaggcctttttgcacttaactacttaggttttgtcattgttctgtagaaattccttgggatg 36197899  T
Q  269 caagttttataacatagtagtctatttggctaatgtcatttgatcctatccaaaatctcttaaac-attatcattatgttttagatgatagaccct 363  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  36197898 caagttttataacatagtagtctttttggctaatgtcatttgatcctatccaaaatctcttaaacaattaccattatgttttagatgatagaccct 36197803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 381
Target Start/End: Complemental strand, 36209450 - 36209326
Alignment:
Q  258 tccttgggatacaagttttataacatagtagtctatttggctaatgtcatttgatcctatccaaaatctcttaaacattat-cattatgttttagatgat 356  Q
    ||||||| |||||||||||||||  || |||||| ||||| | |||||||||||| |||||  || ||| |||||||  || ||||||| ||||||||||    
T  36209450 tccttggaatacaagttttataatttattagtctgtttggttgatgtcatttgatactatctcaactcttttaaacaccattcattatgctttagatgat 36209351  T
Q  357 agaccctgtagcttgatgtttggct 381  Q
    |||| ||||||||||||||||||||    
T  36209350 agactctgtagcttgatgtttggct 36209326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 36191055 - 36190976
Alignment:
Q  43 acatggctgttaaatcattttttaagggtgagt--------ttacttaaccacttaggttttggttatgatgttgttgta 114  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||    
T  36191055 acatggctgttaaatcattttttaagggtgagtggttgggtttacttaaccacttaggttttggttatgatgttgctgta 36190976  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 36201857 - 36201795
Alignment:
Q  120 tttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaa 182  Q
    |||||||||||||||| ||||||||||||||||| |||| | ||||| |||||||||||||||    
T  36201857 tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaa 36201795  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 36215541 - 36215472
Alignment:
Q  339 cattatgttttagatgatagaccctgtagcttgatgtttggctcatgtcaaatttctattttaagtggag 408  Q
    ||||||||||||||| |||||| || | |||||||| |||||||||||||| ||||||||||| ||||||    
T  36215541 cattatgttttagattatagactctattgcttgatgattggctcatgtcaactttctattttaggtggag 36215472  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 381
Target Start/End: Complemental strand, 36196310 - 36196194
Alignment:
Q  266 atacaagttttataacatagtagtctatttggctaatgtcatttgatcctatccaaaatctcttaaacatta-tcattatgttttagatgatagaccctg 364  Q
    |||| ||||||||||  ||||||||| ||||| | |||||||||||| |||||  || ||| |||||||| | ||||||||  ||| ||||||||| |||    
T  36196310 atacgagttttataatttagtagtctgtttggttgatgtcatttgatactatctcaactcttttaaacatcattcattatgcgttacatgatagactctg 36196211  T
Q  365 tagcttgatgtttggct 381  Q
    ||||||| |||||||||    
T  36196210 tagcttgttgtttggct 36196194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 36209606 - 36209518
Alignment:
Q  110 ttgtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgt 198  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||| |  | ||||| ||||||||| ||| |  |||||| |||||||    
T  36209606 ttgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctttgacctgataaataattgt 36209518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 36215637 - 36215577
Alignment:
Q  232 aggttttgtc-attgttctgtagaaattccttgggatacaagttttataacatagtagtct 291  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||||||||  |||||||||    
T  36215637 aggttttgtccatttttctgtagaaattccttggaatacaagttttataatttagtagtct 36215577  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 491
Target Start/End: Complemental strand, 36211111 - 36211060
Alignment:
Q  440 aattgtggtgttgtaactcccattataggccatgggagcctgcatttcatct 491  Q
    ||||||| | ||||||||| ||||||||||||||| ||||||||||||||||    
T  36211111 aattgtgttattgtaactctcattataggccatggaagcctgcatttcatct 36211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 36188155 - 36188074
Alignment:
Q  117 tgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgt 198  Q
    ||||| ||||||||||||||||||||||||||| ||||| |  | ||||| ||||||||| ||| |  |||||| |||||||    
T  36188155 tgtttaattttcaaagtttaatttagaattttgaatattaacttggagtgcaaggctatggtttgacctgataaataattgt 36188074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 36214346 - 36214273
Alignment:
Q  129 aaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgtgtaa 202  Q
    ||||||| ||||||||||||||||| |||| | ||||||||| ||||||||| |  |||||| ||||| |||||    
T  36214346 aaagtttcatttagaattttggatactgatttggagtgtaagtctatgttttgacctgataaataattatgtaa 36214273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 419
Target Start/End: Complemental strand, 36199776 - 36199612
Alignment:
Q  256 attccttgggatacaagttttataacatagtagtctatttggctaatgtcatttgatcctatccaaaatctcttaaacattat-cattatgttttagatg 354  Q
    |||| |||| ||||| |||||| ||  ||||||||| ||  || ||||||||||||| |||||  | |||| |||||||  || |||||||||||||||     
T  36199776 attcattggaatacaggttttaaaatttagtagtctgttctgcaaatgtcatttgatactatcatatatcttttaaacaacattcattatgttttagata 36199677  T
Q  355 atagaccctgtagcttgatgtttggctcatgtcaaatttctattttaagtggagacaggaaattt 419  Q
    ||||||   | |||||||||||||||| || |||  |||| |||| | |||||| || |||||||    
T  36199676 atagactacgcagcttgatgtttggcttatttcatttttcaatttcaggtggaggcatgaaattt 36199612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 36184215 - 36184152
Alignment:
Q  117 tgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgtttt 180  Q
    |||||||||||||||||| | |||||||||||| | ||| |  | |||||||||||||||||||    
T  36184215 tgttttattttcaaagttaagtttagaattttgaaaattaactttgagtgtaaggctatgtttt 36184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 36208700 - 36208641
Alignment:
Q  254 aaattccttgggatacaagttttataacatagtagtctatttggctaatgtcatttgatc 313  Q
    ||||||||||  |||||||||||||||  |||| |||| ||| |||||||||||||||||    
T  36208700 aaattccttgctatacaagttttataatttagtggtctgtttagctaatgtcatttgatc 36208641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 491
Target Start/End: Complemental strand, 36211270 - 36211219
Alignment:
Q  440 aattgtggtgttgtaactcccattataggccatgggagcctgcatttcatct 491  Q
    ||||||| | ||||||||| ||||||||||||||| ||||||| ||||||||    
T  36211270 aattgtgttattgtaactctcattataggccatggaagcctgcgtttcatct 36211219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 491
Target Start/End: Complemental strand, 36211429 - 36211378
Alignment:
Q  440 aattgtggtgttgtaactcccattataggccatgggagcctgcatttcatct 491  Q
    ||||||| | ||||||||| ||||||||||||||| ||||||| ||||||||    
T  36211429 aattgtgttattgtaactctcattataggccatggaagcctgcgtttcatct 36211378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 491
Target Start/End: Complemental strand, 36211588 - 36211537
Alignment:
Q  440 aattgtggtgttgtaactcccattataggccatgggagcctgcatttcatct 491  Q
    ||||||| | ||||||||| ||||||||||||||| ||||||| ||||||||    
T  36211588 aattgtgttattgtaactctcattataggccatggaagcctgcgtttcatct 36211537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Complemental strand, 36189666 - 36189632
Alignment:
Q  440 aattgtggtgttgtaactcccattataggccatgg 474  Q
    ||||||| |||||||||||||||||||||||||||    
T  36189666 aattgtgttgttgtaactcccattataggccatgg 36189632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Complemental strand, 36189831 - 36189797
Alignment:
Q  440 aattgtggtgttgtaactcccattataggccatgg 474  Q
    ||||||| |||||||||||||||||||||||||||    
T  36189831 aattgtgttgttgtaactcccattataggccatgg 36189797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Complemental strand, 36189996 - 36189962
Alignment:
Q  440 aattgtggtgttgtaactcccattataggccatgg 474  Q
    ||||||| |||||||||||||||||||||||||||    
T  36189996 aattgtgttgttgtaactcccattataggccatgg 36189962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 474
Target Start/End: Complemental strand, 36210952 - 36210918
Alignment:
Q  440 aattgtggtgttgtaactcccattataggccatgg 474  Q
    ||||||| |||||||||||||||||||||||||||    
T  36210952 aattgtgttgttgtaactcccattataggccatgg 36210918  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 36200392 - 36200331
Alignment:
Q  110 ttgtagttgttttattttcaaagtttaattt-agaattttggatattgatctagagtgtaag 170  Q
    |||||| |||||| |||||||||||| |||| ||||||||||||||| || | |||||||||    
T  36200392 ttgtagctgttttgttttcaaagtttcattttagaattttggatattaatttggagtgtaag 36200331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 36196483 - 36196395
Alignment:
Q  110 ttgtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgt 198  Q
    |||||| ||||||||||||||| ||||||||||| ||||  ||||| |  | ||||| ||||||||| ||| |  |||||| |||||||    
T  36196483 ttgtagctgttttattttcaaattttaatttagattttttaatattaacttggagtgcaaggctatgctttgacctgataaataattgt 36196395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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