View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_24 (Length: 443)
Name: NF8984_low_24
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 23 - 429
Target Start/End: Original strand, 3466011 - 3466423
Alignment:
| Q |
23 |
ggcaagaccaatttgattgtttaatcaaagaaactagtgggggcaaaatgggaaatagcaaaggagtgaatggaacaccatcat---ggttggcattttt |
119 |
Q |
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| T |
3466011 |
ggcaagaccaatttgattgtttaatcaaagaaactggtgggggcaaaatgggaaatagcaaaagagtgaatggaacaccatcatcatggttggcaatttt |
3466110 |
T |
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| Q |
120 |
tgtttcg---aagtacaacttcactcgtgttcctccatctgtctttcaaaactcacttttgtttcgcaaaaatctcaaccacatcacaattctctgtgtt |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3466111 |
tgtttcgtgtaagtacaacttcactcgtgttcctccatctgtctttcaaaactcacttttgtttcgcaaaaatctcaaccacatcacaattctctgtgtt |
3466210 |
T |
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| Q |
217 |
ccaatcttcttcttcttcgatcaagattttgatttcaatggcttctcgacgccgcatgttgttaaaagtcattatcctcggtgatagtgggtatgcttct |
316 |
Q |
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| T |
3466211 |
ccaatcttcttcttcttcgatcaagattttgatttcaatggcttctcgacgccgcatgttgttaaaagtcattatcctcggtgatagtgggtatgcttct |
3466310 |
T |
|
| Q |
317 |
tcnnnnnnnnnnnnnnncctccaatttctccttccaatttttagttttgaatttaatcatcaaatgagttatatcatttcattgattgaaaaatgaaaag |
416 |
Q |
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|| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3466311 |
tctttttcattttttttcctccaattttttcttccaatttttagttttgaatttaatcatcaaatgagttatatcatttcattgattgaaaaatgaaaag |
3466410 |
T |
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| Q |
417 |
ggttgttgcattt |
429 |
Q |
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| T |
3466411 |
ggttgttgcattt |
3466423 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 43841127 - 43841076
Alignment:
| Q |
259 |
ttctcgacgccgcatgttgttaaaagtcattatcctcggtgatagtgggtat |
310 |
Q |
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|||||| ||||||||||| || |||||||| ||||||||||||||||||||| |
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| T |
43841127 |
ttctcgccgccgcatgttattgaaagtcatcatcctcggtgatagtgggtat |
43841076 |
T |
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