View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_26 (Length: 439)
Name: NF8984_low_26
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 30394030 - 30393777
Alignment:
| Q |
25 |
gtatagatttgttttgtcaggggatgggagctgatgaatgatttccagcactatataggtatgctcacaattaatgtagtcatagtatgcaatagatagt |
124 |
Q |
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| T |
30394030 |
gtatagatttgttttgtcaggggatgggagctgatgaatgatttccagcactatataggtatgctcacaattaatgtagtcatagtatgcaatagatagt |
30393931 |
T |
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| Q |
125 |
tttgaagaccactaattaagtggataatctatttctcaaaaagaaatgtggtattcattatatagttttatagtgaatagataacatagataatggggtg |
224 |
Q |
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| T |
30393930 |
tttgaagaccactaattaagtggataatctatttctcaaaaagaaatgtggtattcattatatagttttatagtgaatagataatatagataatggggtg |
30393831 |
T |
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| Q |
225 |
ggaggattttaatggagagaaattataaaattatatttaataatactagtatat |
278 |
Q |
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| T |
30393830 |
ggaggattttaatggagagaaattataaaattatatttcataatactagtatat |
30393777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 345 - 431
Target Start/End: Complemental strand, 30393710 - 30393624
Alignment:
| Q |
345 |
caaatcatcgagacccttattttataaaatatttgtataaatatcattacttatgacaaaatataggttatattattctaactccaa |
431 |
Q |
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| T |
30393710 |
caaatcatcgagacccttattttataaaatatttgtataaacatcattactcatgacaaaatataggttatattattctaactccaa |
30393624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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