View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_27 (Length: 425)
Name: NF8984_low_27
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 124 - 407
Target Start/End: Original strand, 27761773 - 27762037
Alignment:
| Q |
124 |
aggctcctttcccttgtatcctagctggcgttgatgtagatgtattcgcgggtagactatttttagagacaatttggttttgcacttctgttttggactt |
223 |
Q |
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| T |
27761773 |
aggctcctttcccttgtatcctagctggtgttgatgtagatgtatttgcgggtagactatttttagagacaatttggttttgcacttctgttttggtctt |
27761872 |
T |
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| Q |
224 |
tcgccctcgtataccttcaacatcaggctcctttcctttggtttggcttcttgctgtgtggctttgtcgctgttttagcttggaggtgttgggttggttt |
323 |
Q |
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| T |
27761873 |
tcgccctcgtataccttcagcatcaggctcctttcctttggtttggcttcttgctgtgcggctttgt-------------------agttggggtgattt |
27761953 |
T |
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| Q |
324 |
ttgttggtttgtatcagatgtgccgcatatatatatcacctt-tatgtttgtggtctttggctttcgcaaatgttttgatgcgtc |
407 |
Q |
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||||||| |||||||| |||||||||||||| ||| |||||| ||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
27761954 |
ttgttgggttgtatcatatgtgccgcatatacataacaccttctatgttt-tggtctttggcttttgcaaatgttttgatgcgtc |
27762037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 27756734 - 27756841
Alignment:
| Q |
12 |
agcacagatggatttaaagaactcagttgtgcagattttcttcgttcttgttcccttgtatacacaatctttagtgcacttgtaactgaatggttcaatg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27756734 |
agcacagatggatttaaagaactcagttgtgcagattttcttcgttcttgttcccttgtatacacaatctttagtgcacttgtaactgaatggttcaatg |
27756833 |
T |
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| Q |
112 |
gtagctaa |
119 |
Q |
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| T |
27756834 |
gtagctaa |
27756841 |
T |
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