View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8984_low_29 (Length: 425)
Name: NF8984_low_29
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 124 - 407
Target Start/End: Original strand, 27761773 - 27762037
Alignment:
| Q |
124 |
aggctcctttcccttgtatcctagctggcgttgatgtagatgtattcgcgggtagactatttttagagacaatttggttttgcacttctgttttggactt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27761773 |
aggctcctttcccttgtatcctagctggtgttgatgtagatgtatttgcgggtagactatttttagagacaatttggttttgcacttctgttttggtctt |
27761872 |
T |
|
| Q |
224 |
tcgccctcgtataccttcaacatcaggctcctttcctttggtttggcttcttgctgtgtggctttgtcgctgttttagcttggaggtgttgggttggttt |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| || ||| |
|
|
| T |
27761873 |
tcgccctcgtataccttcagcatcaggctcctttcctttggtttggcttcttgctgtgcggctttgt-------------------agttggggtgattt |
27761953 |
T |
|
| Q |
324 |
ttgttggtttgtatcagatgtgccgcatatatatatcacctt-tatgtttgtggtctttggctttcgcaaatgttttgatgcgtc |
407 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||| |||||| ||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
27761954 |
ttgttgggttgtatcatatgtgccgcatatacataacaccttctatgttt-tggtctttggcttttgcaaatgttttgatgcgtc |
27762037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 27756734 - 27756841
Alignment:
| Q |
12 |
agcacagatggatttaaagaactcagttgtgcagattttcttcgttcttgttcccttgtatacacaatctttagtgcacttgtaactgaatggttcaatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27756734 |
agcacagatggatttaaagaactcagttgtgcagattttcttcgttcttgttcccttgtatacacaatctttagtgcacttgtaactgaatggttcaatg |
27756833 |
T |
|
| Q |
112 |
gtagctaa |
119 |
Q |
| |
|
|||||||| |
|
|
| T |
27756834 |
gtagctaa |
27756841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University