View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_31 (Length: 399)
Name: NF8984_low_31
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 44560735 - 44561096
Alignment:
| Q |
18 |
tcataactcaaatctctatccaacctctcataaactctaggtccattattataaattagagatcaaaaaggttgcgagcatcacttgtatccgtgaacag |
117 |
Q |
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| T |
44560735 |
tcataactcaaatctctatccaacctctcataaactctaggtccattattataaattagagatcaaaaaggttgcaagcatcacttgta-ccgtgaacag |
44560833 |
T |
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| Q |
118 |
cctacatcttcaaacgctctctagagcaccgcttttcttctcatcttgagacaacattgaaatcgccaacaagcatccactggtcttgcatacttccaac |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44560834 |
cctacatcttcaaacgctctctagagcaccgcctttcttctcatcttgagacaacattgaaatcgccaacaagcatccactggtcttgcatacttccaac |
44560933 |
T |
|
| Q |
218 |
aatgtttctgaggtctcccctccactggactaccataaattgccgtaagaaacaaaactcgtcttccatgaaaaactacagaaaatcttttataaagcaa |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
44560934 |
aatgtttctgaggtcccccctccactggactaccataaattgccgtaagaaacaaaactcgtcttccatgaaaaactacggaaaatcttctataaagcaa |
44561033 |
T |
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| Q |
318 |
gaattatccaaaccccctgcttccacgctatcataatcccaccagagtaatctgtattctcgg |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44561034 |
gaattatccaaaccccctgcttccacgctatcataatcccaccagagtaatctgtattctcgg |
44561096 |
T |
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