View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_34 (Length: 376)
Name: NF8984_low_34
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 33658140 - 33658493
Alignment:
| Q |
1 |
attttgggagatattccttcactttaaactttcaatannnnnnnnnnnaagttgatattaaatttaaccnnnnnnntaaacaaacaaaactaacatattt |
100 |
Q |
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| T |
33658140 |
attttgggagatattccttcgctttaaactttcaatatttgtttttt-aagtagatattaaatttaaccaaaaaaataaacaaacaaaactaacatattt |
33658238 |
T |
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| Q |
101 |
attcaaacacaatttcgacattatcttaaatgtgaggacacatggccatat--ctcccataattcttgcacaacagatggagaccttcatatttgactat |
198 |
Q |
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| T |
33658239 |
attcaaacaaaatttcgacattatcttaaatgtgaggacgcatggccatatatctcccataattcttgcacaacagatggagaccttcatatttgactat |
33658338 |
T |
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| Q |
199 |
gaa-ctatctatcatgaatccataactggccaacaattgatagattcaaatcaatctcgacatatattcttgcaaaccttccacagtccacacgacacat |
297 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
33658339 |
gaaactatctatcatgaatccataactggccaataattgatagattcaaatcaatctcgacatatattcttgcaaaccttccacaat-------acacat |
33658431 |
T |
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| Q |
298 |
ccattgtttgaataccaattttaattggttgatctaatgtttctcctaacacaaataaaaca |
359 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33658432 |
ccattgtttgaatatcaactttaattggttgatctaatgtttctcctaacacaaataaaaca |
33658493 |
T |
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