View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_35 (Length: 373)
Name: NF8984_low_35
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 51547639 - 51547279
Alignment:
| Q |
1 |
aatttaaacgttacaaggtatagtagcctgatgaaaacttaatatatagagtataaaaaatagagtggaaaatgatgagcgaaagttgcagatctgaagg |
100 |
Q |
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| T |
51547639 |
aatttcaactttacaagttatattagccacattaaaacttaatata----gtctaaaaaataaagtgtaaaatgattacctaaagttgcagatctgaagg |
51547544 |
T |
|
| Q |
101 |
tggtccatccatcaacatcacttctattgccagtaatgacagtgagatcccttccatcaccaagtagaacaatattggttttattgcttgaaatttcaac |
200 |
Q |
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| T |
51547543 |
tggtccatccatcaacatcacttctattgccagtaatgacagtttgatcccttccatcaccaagtagaacaatattggttttattgcttgaaatttcaac |
51547444 |
T |
|
| Q |
201 |
attttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaaagtttccc |
300 |
Q |
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| T |
51547443 |
attttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaaagtttccc |
51547344 |
T |
|
| Q |
301 |
gttccatctgcagccacaacaatcacattgtcggtgctttgcaagaacctgcggcgatctctgct |
365 |
Q |
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| T |
51547343 |
gttccatctgcagccacaacaatcacattgtcggtgctttgcaagaacctgcggtgatctttgct |
51547279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 82 - 313
Target Start/End: Complemental strand, 19475454 - 19475223
Alignment:
| Q |
82 |
aaagttgcagatctgaaggtggtccatccatcaacatcacttctattgccagtaatgacagtgagatcccttccatcaccaagtagaacaatattggttt |
181 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||| || ||||| |||||||| ||| |||||||||||||| | ||||| || |||| |
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| T |
19475454 |
aaagttgcagatctgaaagtggtccatccatcaacaacacttctgttaccagtgatgacagtagaatcacttccatcaccaagcatcacaatgttagttt |
19475355 |
T |
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| Q |
182 |
tattgcttgaaatttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcatt |
281 |
Q |
| |
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||| |||| |||||||||||||| ||||| ||||||||| ||||| || | ||||||| | | || |||||||||||||| | || || ||||| |
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| T |
19475354 |
tataacttggtatttcaacattttcatcataatacccttctttaacataaataactatcctaaccaaactattatttggagcaaagtttatagcatcatt |
19475255 |
T |
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| Q |
282 |
aatggtgctaaagtttcccgttccatctgcag |
313 |
Q |
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||| |||||||||||||| |||||||||||| |
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| T |
19475254 |
aatagtgctaaagtttccacttccatctgcag |
19475223 |
T |
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