View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_36 (Length: 364)
Name: NF8984_low_36
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_36 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 8705579 - 8705253
Alignment:
| Q |
1 |
aattattaaatcctggataaactcatgttttgtcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8705579 |
aattattaaatcctggataaactcatgttttgtcatactcatttaaataaataaataaaaactcaaataaactcatttaaagcctttattgtaacaaaac |
8705480 |
T |
|
| Q |
101 |
aaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaagagtcttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8705479 |
aaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaagagtcttctt |
8705380 |
T |
|
| Q |
201 |
aatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8705379 |
aatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactc |
8705280 |
T |
|
| Q |
301 |
ttagcatacttataatcaataggacac |
327 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
8705279 |
ttggcatacttataatcaataggacac |
8705253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 33 - 327
Target Start/End: Original strand, 14372181 - 14372474
Alignment:
| Q |
33 |
tcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatga |
132 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||| |
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| T |
14372181 |
tcatactcatttaaataaataaataataactcaaataaactcatttaaaacctttattgtaacaaaacaaacctggt-atcttcaaaggtggtatcatga |
14372279 |
T |
|
| Q |
133 |
tattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaagagtcttcttaatcccaataatattattgctacccctaacct |
232 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14372280 |
tattcatgaatcacccggctgcttttaacaccaggaacacgaccattatagtaaacaagagttttcttaatcccaataatattattgctacccctaacct |
14372379 |
T |
|
| Q |
233 |
taatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatacttataatcaataggacac |
327 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
14372380 |
taatcttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaaccttttactctttgcatacttgtaatcaataggacac |
14372474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 323
Target Start/End: Complemental strand, 8723929 - 8723692
Alignment:
| Q |
86 |
ttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagta |
185 |
Q |
| |
|
||||||||||||||||||||| | ||| || |||||| ||||||||| |||||||| | ||| || | ||||||||||||||| || | | ||| |
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| T |
8723929 |
ttaatgtaacaaaacaaacctgggaatcctctaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaacatgattctcatggta |
8723830 |
T |
|
| Q |
186 |
aacaagagtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctc |
285 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||||||||| | |||| || |||||| | ||||||||||||||||||||| |||| |||||||| |
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| T |
8723829 |
aacaagagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattattagttgtcctt |
8723730 |
T |
|
| Q |
286 |
ttaaaccttttactcttagcatacttataatcaatagg |
323 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||| |
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| T |
8723729 |
ttaaaccttttactctttgcatacttgtattcaatagg |
8723692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 327
Target Start/End: Complemental strand, 8740563 - 8740329
Alignment:
| Q |
93 |
aacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaaga |
192 |
Q |
| |
|
|||| ||||||||| || ||| |||||| ||| |||||||||||||||||| | ||| | | ||||||||||||||| || | | | ||||||||| |
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|
| T |
8740563 |
aacataacaaacctggtgatcatcaaagatggcatcatgatattcatgaatgatccaattagtcttaacaccaggaacaggatcttcatgataaacaaga |
8740464 |
T |
|
| Q |
193 |
gtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaacc |
292 |
Q |
| |
|
||||||||| |||||||||| |||||| |||| |||| |||||| | || || || ||||||||||||||||||||| |||| |||||||| ||||||| |
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| T |
8740463 |
gtcttcttagtcccaataattttattggtacctctaatcttaatgctacgatcatttccagtagctttccaaaaaccattattcgttgtccttttaaacc |
8740364 |
T |
|
| Q |
293 |
ttttactcttagcatacttataatcaataggacac |
327 |
Q |
| |
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|||||||||| |||||||| || |||||||||||| |
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|
| T |
8740363 |
ttttactctttgcatacttgtattcaataggacac |
8740329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 8691210 - 8691037
Alignment:
| Q |
90 |
tgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaaca |
189 |
Q |
| |
|
||||||||||||||||| || ||| | |||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| | ||| |
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| T |
8691210 |
tgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaacacaaccattatagaacaca |
8691111 |
T |
|
| Q |
190 |
agagtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttcca |
263 |
Q |
| |
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|| || || || |||||||||| ||| | | || |||||||||||||| ||||| |||||| |||||||| |
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|
| T |
8691110 |
agtgttttttttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttcca |
8691037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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