View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8984_low_39 (Length: 328)
Name: NF8984_low_39
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_39 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 5280820 - 5280594
Alignment:
| Q |
18 |
agacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggatggttttaaggattgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5280820 |
agacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggatggttttaaggattgaa |
5280721 |
T |
|
| Q |
118 |
gcacttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaataatatagtataggtataaaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5280720 |
gcacttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaataatatagtataggtataaaaat |
5280621 |
T |
|
| Q |
218 |
atatttggccctcgcaagtataccgta |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5280620 |
atatttggccctcgcaagtataccgta |
5280594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 5288833 - 5288626
Alignment:
| Q |
18 |
agacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggatggttttaaggattgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||||||||||||||| |
|
|
| T |
5288833 |
agacagatttttcaaaaactacttgaaacttgtggacacagatgcttcattgttctttcattcaaatggggccatggaatgggtggttttaaggattgaa |
5288734 |
T |
|
| Q |
118 |
gcacttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaataatatagtataggtataaaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |||| || |
|
|
| T |
5288733 |
gcacttcaaaacttgactgtcatcactgcagctcttttgcttattctacttcctcagggatatgtatccccaggtaataatataacataggtttaaatat |
5288634 |
T |
|
| Q |
218 |
atatttgg |
225 |
Q |
| |
|
|| ||||| |
|
|
| T |
5288633 |
atttttgg |
5288626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 14948056 - 14947878
Alignment:
| Q |
18 |
agacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggatggttttaaggattgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||| ||||| ||||| |
|
|
| T |
14948056 |
agacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcaatggaatgggtagttgtaagggttgaa |
14947957 |
T |
|
| Q |
118 |
gcacttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaata |
196 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| || ||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
14947956 |
gcacttcaaaacttgactgtcatcactgcagctttgctgattattctacttcctcggggatatgtatcgccaggtaata |
14947878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 15127295 - 15127472
Alignment:
| Q |
18 |
agacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggatggttttaaggattgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
15127295 |
agacagatttttcaaaaactacttaaaacttgtggatacagatgcttcattgttctttcattccaatgtggcaatggaatggttagttttaaggattgaa |
15127394 |
T |
|
| Q |
118 |
gcacttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaat |
195 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||| | || ||||||| |||||| ||||| |||| ||||||||| |
|
|
| T |
15127395 |
gcacttctaaatttgactgtcatcactgcagctttgctactcattctacttcctcaaagatatctatccccaggtaat |
15127472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 5308533 - 5308725
Alignment:
| Q |
22 |
agatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggatggttttaaggattgaagcac |
121 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
5308533 |
agattttacaaaaattacttaaaacttgtggactcagatgcttcattgttctttcattctaatgtggccatggaatgggtggttttaaggattgaagcaa |
5308632 |
T |
|
| Q |
122 |
ttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaataatatagtataggtataaa |
214 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||||||||||||| |||| |||||||| || ||||||| |||| || ||||||| |||| |
|
|
| T |
5308633 |
ttcaaaatataactgtcatcactgcagctttgttgcttattctacttccttgtggatatgtgtccccaggtagtaatttaatataggtttaaa |
5308725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 5315511 - 5315686
Alignment:
| Q |
23 |
gatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggatggttttaaggattgaagcact |
122 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
5315511 |
gattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatggatggttataaggattgaagcact |
5315610 |
T |
|
| Q |
123 |
tcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaataat |
198 |
Q |
| |
|
|||||| || ||| ||||||| |||||||||||||| ||||| ||||| ||||| || || |||||||||||| |
|
|
| T |
5315611 |
tcaaaatttaactatcatcaccgcagctttgttgctaattcttgttcctcgtggatacgtgtcgccaggtaataat |
5315686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 31524904 - 31524751
Alignment:
| Q |
40 |
ttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggatggttttaaggattgaagcacttcaaaacttgactgtca |
139 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||||||| || ||| | ||||||||| |||||||||| |||||||||| ||||| || | |
|
|
| T |
31524904 |
ttaaaacttgtcgacacagatgctacgctgttctttcattctaatgttgccatggagtggatggttataaggattgaggcacttcaaactttgacagtta |
31524805 |
T |
|
| Q |
140 |
tcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggta |
193 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||||| |||||||| || ||||||| |
|
|
| T |
31524804 |
tcactgcagcattgttgcttattctacttcctcatggatatgtgtctccaggta |
31524751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 113952 - 114019
Alignment:
| Q |
32 |
aaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatgg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
113952 |
aaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcaatggaatgg |
114019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University