View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8984_low_44 (Length: 301)

Name: NF8984_low_44
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8984_low_44
NF8984_low_44
[»] chr4 (3 HSPs)
chr4 (17-170)||(54602273-54602431)
chr4 (129-202)||(35431416-35431489)
chr4 (162-211)||(46513854-46513903)
[»] chr7 (8 HSPs)
chr7 (162-297)||(6272569-6272706)
chr7 (129-297)||(46526114-46526271)
chr7 (162-297)||(42014405-42014534)
chr7 (130-170)||(6272511-6272551)
chr7 (162-211)||(1298976-1299025)
chr7 (214-273)||(45075374-45075433)
chr7 (162-202)||(45166388-45166428)
chr7 (162-202)||(47863874-47863914)
[»] chr3 (8 HSPs)
chr3 (162-267)||(18912112-18912217)
chr3 (223-297)||(45034937-45035013)
chr3 (164-296)||(18942724-18942851)
chr3 (223-297)||(48165072-48165148)
chr3 (162-211)||(33942636-33942685)
chr3 (162-202)||(177539-177579)
chr3 (162-202)||(2282221-2282261)
chr3 (162-198)||(48165151-48165187)
[»] chr8 (5 HSPs)
chr8 (162-297)||(41270131-41270260)
chr8 (162-214)||(17443241-17443293)
chr8 (162-211)||(26702788-26702837)
chr8 (162-211)||(44322926-44322975)
chr8 (162-211)||(45120633-45120682)
[»] chr1 (6 HSPs)
chr1 (241-297)||(4911733-4911791)
chr1 (162-211)||(28865799-28865848)
chr1 (162-214)||(7407366-7407418)
chr1 (162-202)||(36354668-36354708)
chr1 (244-297)||(42463423-42463478)
chr1 (166-202)||(45475444-45475480)
[»] chr5 (3 HSPs)
chr5 (162-211)||(6556629-6556678)
chr5 (162-211)||(26752108-26752157)
chr5 (223-273)||(7263218-7263268)
[»] chr2 (3 HSPs)
chr2 (162-211)||(13331797-13331846)
chr2 (214-273)||(26394031-26394090)
chr2 (244-297)||(2119644-2119699)
[»] scaffold0006 (1 HSPs)
scaffold0006 (162-202)||(19092-19132)
[»] chr6 (3 HSPs)
chr6 (162-202)||(31860625-31860665)
chr6 (214-273)||(2946413-2946472)
chr6 (162-202)||(32264111-32264151)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 54602273 - 54602431
Alignment:
Q  17 agattcggcaatttgttgaaacacaagtatgatgagattaagattatagatttagaaaattgttttt------ctaaaaacttcatattaacagtagtaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       | ||||||| ||||||||| ||||||    
T  54602273 agattcggcaatttgttgaaacacaagtatgatgagattaagattatagatttagaaaattgcttttttgaccatgaaaactttatattaacattagtaa 54602372  T
Q  111 aatactaaaataaattttagcggccgttaacaaccgctcaatgttacacctgcagttaac 170  Q
    |||||||||||    || |||||||||||||||||||||||||||||||| |||||||||    
T  54602373 aatactaaaat-gtcttcagcggccgttaacaaccgctcaatgttacaccggcagttaac 54602431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 35431489 - 35431416
Alignment:
Q  129 agcggccgttaacaaccgctcaatgttacacctgcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    |||||| ||||||||||| |||||  ||| || ||||||||||   | |||||||||||||||| |||||||||    
T  35431489 agcggcagttaacaaccgttcaataatacgccggcagttaactgatgctcacaccagttaacagcatcagtgca 35431416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 46513854 - 46513903
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||| |||||||||||||||||||||| || |||| ||| ||||    
T  46513854 gcagttaactgccgttcacaccagttaacagaaccaatgcagtctgcact 46513903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 297
Target Start/End: Original strand, 6272569 - 6272706
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccactagtgcactaggttttccaggaactctggcctatttttgcatccaattgga 261  Q
    ||||||||||  | ||||||||||||||||||| || ||||||||||||||||||||| | ||||| ||||||| |||||| ||||||||| ||||||||    
T  6272569 gcagttaactgtcattcacaccagttaacagaaccaatgcactctccactagtgcactggtttttctaggaactttggcctgtttttgcattcaattgga 6272668  T
Q  262 aattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    |||||| ||||  ||| |||||||||||||||||||||    
T  6272669 aattaatgtaaataaccaggatatgtcgggaaattaaa 6272706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 129 - 297
Target Start/End: Original strand, 46526114 - 46526271
Alignment:
Q  129 agcggccgttaacaaccgctcaatgttacacctgcagttaactaccgttcacaccagttaacagaatcagtgcactctccactagtgcactaggttttcc 228  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||||||||             ||||||| |||||||||||| | |||||     
T  46526114 agcggccgttaacaaccgctcaatgttacggcggcagttaactaccgttcacaccagt-------------gcactctgcactagtgcactggtttttct 46526200  T
Q  229 aggaactctggcctatttttgcatccaattggaaattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||    
T  46526201 aggaactttggcctgtttttgcatccaattggaaattaaagcaaataaccaggatatgtcgggaaattaaa 46526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 42014534 - 42014405
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccactagtgcactaggttttccaggaactctggcctatttttgcatccaattgga 261  Q
    ||||||||||  |||||||||||||||||||||  |||||||| | |||| ||        ||||||||||||| ||| || |||||||||||||||| |    
T  42014534 gcagttaactgtcgttcacaccagttaacagaactagtgcactatgcactggt--------ttttccaggaactttggtctgtttttgcatccaattgca 42014443  T
Q  262 aattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    |||||||||||  ||| | ||||| |||||||||||||    
T  42014442 aattaaagtaaataaccatgatatatcgggaaattaaa 42014405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 6272511 - 6272551
Alignment:
Q  130 gcggccgttaacaaccgctcaatgttacacctgcagttaac 170  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  6272511 gcggccgttaacaaccgctcaatgttacgcctgcagttaac 6272551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 1299025 - 1298976
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  1299025 gcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcact 1298976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 45075374 - 45075433
Alignment:
Q  214 tgcactaggttttccaggaactctggcctatttttgcatccaattggaaattaaagtaaa 273  Q
    |||||| | ||||||||||| |||| | | |||||||||||||||| |||||||||||||    
T  45075374 tgcactggtttttccaggaaatctgtcttgtttttgcatccaattgcaaattaaagtaaa 45075433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 45166388 - 45166428
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    |||||||||| ||| |||||||||||| |||||||||||||    
T  45166388 gcagttaactgccgctcacaccagttagcagaatcagtgca 45166428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 47863874 - 47863914
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  47863874 gcagttaattgccgttcacaccagttaacagaaccagtgca 47863914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 18912217 - 18912112
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccactagtgcactaggttttccaggaactctggcctatttttgcatccaattgga 261  Q
    |||||||||| | |||||||||||||||||||| || |||||| | |||||||||||| | ||||||||||||| |||| | ||||||||||||||||||    
T  18912217 gcagttaactgctgttcacaccagttaacagaaccaatgcactttgcactagtgcacttgtttttccaggaactttggcatgtttttgcatccaattgga 18912118  T
Q  262 aattaa 267  Q
    ||||||    
T  18912117 aattaa 18912112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 45035013 - 45034937
Alignment:
Q  223 ttttccaggaactctggcctatttttgcatccaattggaaattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  45035013 ttttccaggaactttggcctgtttttgcatccaattgcaaattaaagtaaataaccaggatatgtcgggaaattaaa 45034937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 18942724 - 18942851
Alignment:
Q  164 agttaactaccgttcacaccagttaacagaatcagtgcactctccactagtgcactaggttttccaggaactctggcctatttttgcatccaattggaaa 263  Q
    |||||||||||||||| |||| ||||||||| | ||||||||| |||| |       | ||||||||||||| |||| | |||||||||||  |||||||    
T  18942724 agttaactaccgttcataccaattaacagaaccggtgcactctacacttg-------gtttttccaggaactttggcttgtttttgcatcctgttggaaa 18942816  T
Q  264 ttaaagt--aaaactaggatatgtcgggaaattaa 296  Q
    |||||||  | ||| ||||||||||||||||||||    
T  18942817 ttaaagttaataacaaggatatgtcgggaaattaa 18942851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 48165148 - 48165072
Alignment:
Q  223 ttttccaggaactctggcctatttttgcatccaattggaaattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    |||| |||||||| |||| | |||||||||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  48165148 tttttcaggaactttggcatgtttttgcatccaattgcaaattaaagtaaataaccaggatatgtcgggatattaaa 48165072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 33942685 - 33942636
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  33942685 gcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcact 33942636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 177539 - 177579
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    ||||||||||  | |||||||||||||||||||||||||||    
T  177539 gcagttaactgtcattcacaccagttaacagaatcagtgca 177579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 2282221 - 2282261
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    |||||||||| ||| |||||||||||| |||||||||||||    
T  2282221 gcagttaactgccgctcacaccagttagcagaatcagtgca 2282261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 48165187 - 48165151
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcag 198  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  48165187 gcagttaactgccgttcataccagttaacagaatcag 48165151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 41270260 - 41270131
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccactagtgcactaggttttccaggaactctggcctatttttgcatccaattgga 261  Q
    |||||||| | |||||||||| |||||||| || ||||||||||| |||| ||        ||||||||||||| |||||| ||||||||| |||||| |    
T  41270260 gcagttaattgccgttcacactagttaacaaaaccagtgcactctgcactggt--------ttttccaggaactttggcctgtttttgcatacaattgaa 41270169  T
Q  262 aattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    |||||||||||  ||  |||||||||||||||||||||    
T  41270168 aattaaagtaaataatcaggatatgtcgggaaattaaa 41270131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 17443293 - 17443241
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccactagt 214  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  17443293 gcagttaactgccgttcacaccagttaacagaatcagtgcagtctgcactagt 17443241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 26702837 - 26702788
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  26702837 gcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcact 26702788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 44322975 - 44322926
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||||||| || ||||||||||||||||||||||| ||| ||||    
T  44322975 gcagttaactaccgctcccaccagttaacagaatcagtgcagtctgcact 44322926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 45120682 - 45120633
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||| |||||||||||||| ||||||| ||||||| ||| ||||    
T  45120682 gcagttaactgccgttcacaccagtaaacagaaccagtgcaatctgcact 45120633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 4911733 - 4911791
Alignment:
Q  241 ctatttttgcatccaattggaaattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    ||||||||||||||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  4911733 ctatttttgcatccaattgcaaattaaagtaaacaaccaggatatgtcgggaaattaaa 4911791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 28865848 - 28865799
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  28865848 gcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcact 28865799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 7407418 - 7407366
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccactagt 214  Q
    ||||||||||   |||||||||||||||||||| ||||||| ||| |||||||    
T  7407418 gcagttaactgttgttcacaccagttaacagaaccagtgcagtctgcactagt 7407366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 36354668 - 36354708
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    ||||||||||  ||||||||||||||||||||| |||||||    
T  36354668 gcagttaactgtcgttcacaccagttaacagaaccagtgca 36354708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 42463423 - 42463478
Alignment:
Q  244 tttttgcatccaattggaaattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    |||||||||||||||| ||||||||| ||  | | |||||||||||||||||||||    
T  42463423 tttttgcatccaattgcaaattaaagaaaacagccaggatatgtcgggaaattaaa 42463478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 45475480 - 45475444
Alignment:
Q  166 ttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  45475480 ttaactgccgctcacaccagttaacagaatcagtgca 45475444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 6556678 - 6556629
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  6556678 gcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcact 6556629  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 26752157 - 26752108
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  26752157 gcagttaactaccgctcacaccagttaacagaaccagtgcagtctgcact 26752108  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 7263268 - 7263218
Alignment:
Q  223 ttttccaggaactctggcctatttttgcatccaattggaaattaaagtaaa 273  Q
    ||||||||||| | || ||| |||||||||||||||| |||||||||||||    
T  7263268 ttttccaggaaatttgtcctgtttttgcatccaattgcaaattaaagtaaa 7263218  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 13331846 - 13331797
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgcactctccact 211  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  13331846 gcagttaactgccgttcacaccagttaacagaaccagtgcagtctgcact 13331797  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 26394090 - 26394031
Alignment:
Q  214 tgcactaggttttccaggaactctggcctatttttgcatccaattggaaattaaagtaaa 273  Q
    |||||| | ||||||||||| | || ||| |||||||||||||||| |||||||||||||    
T  26394090 tgcactggtttttccaggaaatttgtcctctttttgcatccaattgcaaattaaagtaaa 26394031  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 2119644 - 2119699
Alignment:
Q  244 tttttgcatccaattggaaattaaagtaa--aactaggatatgtcgggaaattaaa 297  Q
    |||||||||||||||| ||||||||||||  | | |||||||||| ||||||||||    
T  2119644 tttttgcatccaattgcaaattaaagtaaacagccaggatatgtcaggaaattaaa 2119699  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 19092 - 19132
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  19092 gcagttaactgccgctcacaccagttaacagaatcagtgca 19132  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 31860665 - 31860625
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  31860665 gcagttaactgccgttcacaccagttaacagaaccagtgca 31860625  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 2946472 - 2946413
Alignment:
Q  214 tgcactaggttttccaggaactctggcctatttttgcatccaattggaaattaaagtaaa 273  Q
    |||||| | ||||||||||| | || |||| ||||||||||||||| |||||||||||||    
T  2946472 tgcactggtttttccaggaaatttgtcctaattttgcatccaattgcaaattaaagtaaa 2946413  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 32264151 - 32264111
Alignment:
Q  162 gcagttaactaccgttcacaccagttaacagaatcagtgca 202  Q
    |||||||||| |||||||||||||| ||||||| |||||||    
T  32264151 gcagttaactgccgttcacaccagtaaacagaaccagtgca 32264111  T

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