View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8984_low_47 (Length: 297)

Name: NF8984_low_47
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8984_low_47
NF8984_low_47
[»] chr7 (2 HSPs)
chr7 (1-282)||(34561776-34562058)
chr7 (47-96)||(12804658-12804707)
[»] chr2 (1 HSPs)
chr2 (88-184)||(26557709-26557805)
[»] scaffold0219 (1 HSPs)
scaffold0219 (47-95)||(1808-1856)
[»] chr6 (1 HSPs)
chr6 (47-95)||(8484405-8484453)
[»] chr4 (2 HSPs)
chr4 (47-95)||(21802655-21802703)
chr4 (47-95)||(45891672-45891720)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 34562058 - 34561776
Alignment:
Q  1 cataacccaatcatcatttatgacaaacnnnnnnnnaaatgacaaacatttatgatatattaaagtaacaaagtgtaattaacaatcaaataaaatacgg 100  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34562058 cataacccaatcatcatttatgacaaacttttttttaaatgacaaacatttatgatatattaaagtaacaaagtgtaactaacaatcaaataaaatacgg 34561959  T
Q  101 gacaaatatttattaatgaagagtataaaaacacaagacaagtatttgtcattgacatataa-aaaacacgggacaaatatttgacattaataaattnnn 199  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       
T  34561958 tacaaatatttattaatgaagagtataaaaacacaagacaagtatttgtcattgacatataaaaaaacacgggacaaatatttgacattaataaattaaa 34561859  T
Q  200 nnnntcatgggacacatatttatcactgatacnnnnnnngatgtacgagacacatatagtttgttatcttgaaatcaccatat 282  Q
        ||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  34561858 aaaatcacgggacacatatttatcactgatactttttttgatgtacgagacacatatagtttgttatcttgaaatcaccatat 34561776  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 12804707 - 12804658
Alignment:
Q  47 catttatgatatattaaagtaacaaagtgtaattaacaatcaaataaaat 96  Q
    ||||||||| |||||||||||| ||| |||||  ||||||||||||||||    
T  12804707 catttatgacatattaaagtaagaaaatgtaaccaacaatcaaataaaat 12804658  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 26557805 - 26557709
Alignment:
Q  88 aaataaaatacgggacaaatatttattaatgaagagtataaaaa-cacaagacaagtatttgtcattgacatataaaaaacacgggacaaatatttga 184  Q
    |||||||| |||  |||||||||| ||| |||||||||||||||  ||||||||| ||||||||| ||| |||| |||||| || |||||||||||||    
T  26557805 aaataaaaaacgcaacaaatatttcttagtgaagagtataaaaattacaagacaaatatttgtcaatgatatat-aaaaacccgagacaaatatttga 26557709  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 1808 - 1856
Alignment:
Q  47 catttatgatatattaaagtaacaaagtgtaattaacaatcaaataaaa 95  Q
    ||||||||| ||| |||||||||||||| |||  |||||||||||||||    
T  1808 catttatgacatactaaagtaacaaagtataaccaacaatcaaataaaa 1856  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 8484453 - 8484405
Alignment:
Q  47 catttatgatatattaaagtaacaaagtgtaattaacaatcaaataaaa 95  Q
    ||||||||| ||| |||||||||||||| ||| |||||| |||||||||    
T  8484453 catttatgacatactaaagtaacaaagtataactaacaaccaaataaaa 8484405  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 21802703 - 21802655
Alignment:
Q  47 catttatgatatattaaagtaacaaagtgtaattaacaatcaaataaaa 95  Q
    ||||||||| ||| |||||||||||||| |||  |||||||||||||||    
T  21802703 catttatgacataataaagtaacaaagtataaccaacaatcaaataaaa 21802655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 45891672 - 45891720
Alignment:
Q  47 catttatgatatattaaagtaacaaagtgtaattaacaatcaaataaaa 95  Q
    ||||||||| ||| |||||||||||||| |||  |||||||||||||||    
T  45891672 catttatgacatactaaagtaacaaagtataaccaacaatcaaataaaa 45891720  T

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