View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_48 (Length: 297)
Name: NF8984_low_48
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9165603 - 9165831
Alignment:
| Q |
1 |
tggaaactaacctgcttgatttcaggaggagcggggatttcgggatccaaatcttccctttcctcaggatcattaccaggagcttcatcatcatcagtga |
100 |
Q |
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| T |
9165603 |
tggaaactaacctgcttgatttcaagaggagcggggatttcaggatccaaatcttccctttcctcaggatcattaccaggagcttcatcatcatcagtga |
9165702 |
T |
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| Q |
101 |
aaatctcttcatgctcccaatcatcacctttaacagatatacaggtacaactatacttacagaaagaataaatacaaaatctgatttgaaagttttcaat |
200 |
Q |
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| T |
9165703 |
aaatctcttcatgctcccaatcatcacctgtaacagatatacaggtacaactatacttacagaaagaataaatacaaactctgatttgaaagttttcaat |
9165802 |
T |
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| Q |
201 |
ttataccgagttaactctctctctctctc |
229 |
Q |
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| T |
9165803 |
ttataccgagttaactctctctctctctc |
9165831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 9154356 - 9154524
Alignment:
| Q |
1 |
tggaaactaacctgcttgatttcaggaggagcggggatttcgggatccaaatcttccctttcctcaggatcattaccaggagcttcatcatcatcagtga |
100 |
Q |
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|||||||| ||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
9154356 |
tggaaactgacctgtttgatctcaggaggagcggggacttcgggagccaaatcttccctttcctcgggatcattaccaacagcttcatcatcatcagtga |
9154455 |
T |
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| Q |
101 |
aaatctcttcatgctcccaatcatcacctttaacagatatacaggtacaactatacttacagaaagaataa |
171 |
Q |
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| T |
9154456 |
aaatctcttcatgctcccaatcatcacctgtaacaggtgtacaagcacaactatact--cagaaagaataa |
9154524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 45451294 - 45451248
Alignment:
| Q |
251 |
ataccgtccataaaggcaaagaatgaagcctgtgtgttacaacaagc |
297 |
Q |
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| T |
45451294 |
ataccgtccataaaggcaaagaaggaagcctgtgtgttacaacaagc |
45451248 |
T |
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