View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_5 (Length: 877)
Name: NF8984_low_5
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 453 - 861
Target Start/End: Complemental strand, 9629810 - 9629402
Alignment:
| Q |
453 |
actgtatagtataataactaatcaatgacatgcagtacacaaagcatcttttctctactgatcatttctgaaacaccagggatgtatatcataacatcat |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629810 |
actgtatagtataataactaatcaatgacatgcagtacacaaagcatcttttctctactgatcatttctgaaacaccagggatgtatatcataacatcat |
9629711 |
T |
|
| Q |
553 |
tctggcattgtatgtatttggtgaaaaaatcaatgtatggtccaatattgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtg |
652 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629710 |
tctggcattgtatgtatttggtgaaaaaatgaatgtatggtccaatattgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtg |
9629611 |
T |
|
| Q |
653 |
ttaatgttatttatgttttcaatttcggtccattaataattaattatattttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgct |
752 |
Q |
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| T |
9629610 |
ttaatgttatttatgttttcaattttggtccattaataattaattatattttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgct |
9629511 |
T |
|
| Q |
753 |
gaagaacttgctcaacaaatccagcaaacattttattaagataggttattaccatctagagacaagatcaagaatcagtgaatatctcttttctttttat |
852 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9629510 |
gaagaacttgctcaacaaatccagcaaacattttattaagaaaggttattaccatctagagacaagatcaagaatcaatgaatatctcttttctttttat |
9629411 |
T |
|
| Q |
853 |
gtctcacag |
861 |
Q |
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| T |
9629410 |
gtctcacag |
9629402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 32726217 - 32726641
Alignment:
| Q |
18 |
atgtataaacactgttattttcctcattatggaccatactaagtgttgtgcgacttctttgaatattcccttaattatgtagattattcattatgaaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726217 |
atgtataaacactgttattttcctcattatggaccatactaagtgttgtgcgacttctttgaatattcccttaattatgtagattattcattatgaaagg |
32726316 |
T |
|
| Q |
118 |
tgttattattttacctatgacataaatggagtcacagtagttaatgtcgttgggaacccaggctgcttctgtgtatgcgaatggagatgatgactcaata |
217 |
Q |
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| T |
32726317 |
tgttattattttacctatgacataaatggagtcacagtagttagtgtcgttgggaacccaggctgcttctgtgtatgcgaatggagatgatgactcaata |
32726416 |
T |
|
| Q |
218 |
tttggaattagttagtctaggagtcgggtatcatggagttaaaattttgtatttttattgttctgatggtgtaatttatataacatgatatcaagtatga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| |
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| T |
32726417 |
tttggaattagttagtctaggagtcgggtatcatggagttaaaattttgtatttttattgttctaatggtgtaatttatataacataatatcaaggatga |
32726516 |
T |
|
| Q |
318 |
tttaaatattatttttaacatcaagtaaacgcatagtttagattcaagttattctatgcaaaacatgtttactatgacaacctttgcacacttgatttat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
32726517 |
tttaaatattatttttaacatcaagtaaacgcatagtttagattcaagttattctatgcaaaacatgtttactacgacaacctttgcacac-tgatttat |
32726615 |
T |
|
| Q |
418 |
cc-ttttttccttttgtagtgatgtc |
442 |
Q |
| |
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|| ||||||||||||||||||||||| |
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| T |
32726616 |
cctttttttccttttgtagtgatgtc |
32726641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 718 - 784
Target Start/End: Original strand, 41258571 - 41258637
Alignment:
| Q |
718 |
ttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacatt |
784 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41258571 |
ttatatagattggaattgaatgccaactgagtgctgaagaacttgctcaacaaatccagcaaacatt |
41258637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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