View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8984_low_50 (Length: 285)

Name: NF8984_low_50
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8984_low_50
NF8984_low_50
[»] chr5 (3 HSPs)
chr5 (1-262)||(41886663-41886924)
chr5 (84-143)||(28695710-28695769)
chr5 (83-143)||(28673460-28673520)
[»] chr4 (6 HSPs)
chr4 (31-151)||(7308311-7308431)
chr4 (56-146)||(8186543-8186633)
chr4 (56-135)||(7225346-7225425)
chr4 (62-134)||(532608-532680)
chr4 (82-131)||(1518820-1518869)
chr4 (83-151)||(1481563-1481631)
[»] chr6 (1 HSPs)
chr6 (56-151)||(9411909-9412004)
[»] chr8 (2 HSPs)
chr8 (56-134)||(18314833-18314911)
chr8 (179-240)||(18314716-18314777)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 41886924 - 41886663
Alignment:
Q  1 aacctccgttatgcgataacagtcacgcaagatgacctcttccagaaactctcttttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886924 aacctccgttatgcgataacagtcacgcaagatgacctcttccagaaactctcttttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatga 41886825  T
Q  101 ctagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctctgcctcatcatagcgtacacattgtatcgggtcactgaggtcgaggtctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886824 ctagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctctgcctcatcatagcgtacacattgtatcgggtcactgaggtcgaggtctt 41886725  T
Q  201 ccagcaaagggaaacaatcagagatgaggaatagatcagtactataaataaattgcacattc 262  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  41886724 ccagcaaagggaaacaaccagagatgaggaataggtcagtactataaataaattgcacattc 41886663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 28695769 - 28695710
Alignment:
Q  84 cgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaa 143  Q
    |||||||||||||||||| ||||||||||||||| |  ||||||||||||| || |||||    
T  28695769 cgttgatgtagtgatgacgagagagattaaccttgcagagtttgaaaagtggcaatgaaa 28695710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 28673520 - 28673460
Alignment:
Q  83 tcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaa 143  Q
    ||||||||||||||||||  ||||||||||||||| |  ||||||||||||| || |||||    
T  28673520 tcgttgatgtagtgatgatgagagagattaaccttgcagagtttgaaaagtggcaatgaaa 28673460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 7308311 - 7308431
Alignment:
Q  31 gatgacctcttccagaaactctcttttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaa 130  Q
    |||| |||||||||||| ||  |  ||||||||||||| ||||||||| |||| |||||||||  |||||| ||||||||| ||||| || |||||||||    
T  7308311 gatggcctcttccagaagcttacaattcttaaacaagtggaaaagcaacctattgttgatgtaccgatgacgagagagatttaccttgcggagtttgaaa 7308410  T
Q  131 agtgccagtgaaagaggctct 151  Q
    ||| || ||||||||| ||||    
T  7308411 agttcccgtgaaagagcctct 7308431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 8186633 - 8186543
Alignment:
Q  56 ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagag 146  Q
    ||||| |||||||  ||||||||| | |||||||| |||| |||| |||| ||||||||||| || |||||||||||||||| ||||||||    
T  8186633 ttctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtgccaatgaaagag 8186543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 7225425 - 7225346
Alignment:
Q  56 ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgc 135  Q
    ||||||||||| | ||||||||||  ||| |||||||| | ||||| ||||||||||||| | || ||||||||||||||    
T  7225425 ttcttaaacaaatggaaaagcaattcatcattgatgtattcatgaccagagagattaaccctacggagtttgaaaagtgc 7225346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 532608 - 532680
Alignment:
Q  62 aacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtg 134  Q
    ||||||| ||||||| ||   ||||||||||||| |||| |||| ||||||||||| || |||||||||||||    
T  532608 aacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtg 532680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 1518869 - 1518820
Alignment:
Q  82 atcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaa 131  Q
    ||||||||| ||||||||||||| |||||||| ||| || ||||||||||    
T  1518869 atcgttgatatagtgatgactagtgagattaaacttccggagtttgaaaa 1518820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 1481563 - 1481631
Alignment:
Q  83 tcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctct 151  Q
    ||||||| ||||| ||||  ||||||||||| ||| || |||||||| ||||||| |||||||| ||||    
T  1481563 tcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaagagtgccaatgaaagagcctct 1481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 9411909 - 9412004
Alignment:
Q  56 ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctct 151  Q
    ||||||||||||| ||| ||  || | ||||||||||||||||||| ||||||||||| |||    ||||||||||||| || |||||||| ||||    
T  9411909 ttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctct 9412004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 18314911 - 18314833
Alignment:
Q  56 ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtg 134  Q
    ||||| ||||||| ||||||| ||  |||||||||||||| ||||  || || |||||||||||| |||||||||||||    
T  18314911 ttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaacctttcggagtttgaaaagtg 18314833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 18314777 - 18314716
Alignment:
Q  179 gggtcactgaggtcgaggtcttccagcaaagggaaacaatcagagatgaggaatagatcagt 240  Q
    |||| ||| |||||||| ||||| |||||||||||||||||||  |||||||| ||||||||    
T  18314777 gggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagt 18314716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University