View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_52 (Length: 283)
Name: NF8984_low_52
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_52 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 21942437 - 21942700
Alignment:
| Q |
20 |
agaatacaatgaagcaattaaagaggaactcgggaatgatgtctacaattttgggaagatgattctagaaattttaactggcaaaaggttgacaagtgca |
119 |
Q |
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| T |
21942437 |
agaatacaatgaagcaattaaagaggaactaaggaatgatgtctacaattttgggaagatgattctagaaattttaactggcaaaaggttgacaagtgca |
21942536 |
T |
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| Q |
120 |
gcagttagcattgacaacaaatcacgggaggttctactaagagaagtttgcaatggtaatgaagtggcttctgctagtacaatccaagagattaaactgg |
219 |
Q |
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| T |
21942537 |
gcagctagcattgacaacaaatcacaggagattctactaagagaagtttgcaatggtaatgaagtggcttctgcaagtacaatccaagagattaaaatgg |
21942636 |
T |
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| Q |
220 |
ttcttgaagtttctatgatttgcagtaaaagcagatcgtccgatcgcccatccatggaagatgc |
283 |
Q |
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| T |
21942637 |
ttcttgaagtttctatgatttgcactaaaagcagatcatcggatcgcccatccatggaagatgc |
21942700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 10799744 - 10799481
Alignment:
| Q |
20 |
agaatacaatgaagcaattaaagaggaactcgggaatgatgtctacaattttgggaagatgattctagaaattttaactggcaaaaggttgacaagtgca |
119 |
Q |
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||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
10799744 |
agaatacaatgaatcaatggaagaggaactcggcagcgatgtctacaattttgggaagatgattctagaaattttaaccggcagaaggttgacaagtgca |
10799645 |
T |
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| Q |
120 |
gcagttagcattgacaacaaatcacgggaggttctactaagagaagtttgcaatggtaatgaagtggcttctgctagtacaatccaagagattaaactgg |
219 |
Q |
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| T |
10799644 |
gcagccaacattcacagcaaatcacatgagactcttctaagagaagtttacaatgacaatgaagtgacctctgccagttcaatggaagagattaaattgg |
10799545 |
T |
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| Q |
220 |
ttcttgaagtttctatgatttgcagtaaaagcagatcgtccgatcgcccatccatggaagatgc |
283 |
Q |
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| T |
10799544 |
ttcttgaggttgctatgctttgcaccagaagcagatcatcggatcggccatccatggaagatgc |
10799481 |
T |
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