View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8984_low_63 (Length: 255)

Name: NF8984_low_63
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8984_low_63
NF8984_low_63
[»] chr1 (13 HSPs)
chr1 (2-240)||(6391542-6391780)
chr1 (126-236)||(6349897-6350009)
chr1 (57-126)||(6399874-6399943)
chr1 (56-120)||(6404599-6404663)
chr1 (56-135)||(6380807-6380886)
chr1 (73-126)||(6367290-6367343)
chr1 (175-238)||(6382578-6382641)
chr1 (132-214)||(6404738-6404821)
chr1 (57-120)||(6428490-6428553)
chr1 (56-114)||(6415889-6415947)
chr1 (63-120)||(6349284-6349341)
chr1 (126-238)||(6400024-6400134)
chr1 (57-125)||(6359668-6359732)
[»] chr3 (3 HSPs)
chr3 (180-234)||(28001685-28001739)
chr3 (193-231)||(28052917-28052955)
chr3 (193-231)||(28063342-28063380)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 6391542 - 6391780
Alignment:
Q  2 gaggaggagcacagaaaaaagctaattgttctgttgagagagaagtgcatgattatgatttggtggcttgcaacaaggaacactcaggttaaaatatttc 101  Q
    ||||| || ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6391542 gaggaagaccaccgaaaaaagctaattgttctcttgagagagaagtgcatgattatgatttggtggcttgcaacaaggaacactcaggttaaaatatttc 6391641  T
Q  102 tttatttttcattaactttaactatcttgattttggcttttcccttaatgggtccttttataccctcacagtcaagtaatctcatgtaaccataatatca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6391642 tttatttttcattaactttaactatcttgattttggcttttcccttaatgggtccttttataccctcacagtcaagtaatctcatgtaagcataatatca 6391741  T
Q  202 tcaacataaacaaaaaatacaattagttttcctccttct 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6391742 tcaacataaacaaaaaatacaattagttttcctccttct 6391780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 6349897 - 6350009
Alignment:
Q  126 tcttgattttggcttttcccttaatgggtccttttatacc--ctcacagtcaagtaatctcatgtaaccataatatcatcaacataaacaaaaaatacaa 223  Q
    |||| |||||||| ||||||||||||| |||| ||| ||   ||| |||||||||||||||  |||||| ||||||||||||||||||||| || |||||    
T  6349897 tcttcattttggcctttcccttaatggctcctattaaactgtctctcagtcaagtaatctctggtaaccttaatatcatcaacataaacaagaactacaa 6349996  T
Q  224 ttagttttcctcc 236  Q
    |||||||||||||    
T  6349997 ttagttttcctcc 6350009  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 6399874 - 6399943
Alignment:
Q  57 tgatttggtggcttgcaacaaggaacactcaggttaaaatatttctttatttttcattaactttaactat 126  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||  |||||||||||| || |||||    
T  6399874 tgatttggtggcttgtaacaaggaacactcaggttcaaatatttcttcctttttcattaacctttactat 6399943  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 6404599 - 6404663
Alignment:
Q  56 atgatttggtggcttgcaacaaggaacactcaggttaaaatatttctttatttttcattaacttt 120  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||| |||||| ||||||||    
T  6404599 atgatttggtggtttgtaacaaggaactctcaggttaaaatatttctttctttttcgttaacttt 6404663  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 6380807 - 6380886
Alignment:
Q  56 atgatttggtggcttgcaacaaggaacactcaggttaaaatatttctttatttttcattaactttaactatcttgatttt 135  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||| | || |||||||||| ||||| || |||||    
T  6380807 atgatttggtggcttgtaacaaggaacaccctggttaaaatatttctttctgttccattaacttttactatattaatttt 6380886  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 6367290 - 6367343
Alignment:
Q  73 aacaaggaacactcaggttaaaatatttctttatttttcattaactttaactat 126  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| |||||    
T  6367290 aacaaggaacactcaggttaaaatatttctttcttttccattaacttttactat 6367343  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 6382578 - 6382641
Alignment:
Q  175 aagtaatctcatgtaaccataatatcatcaacataaacaaaaaatacaattagttttcctcctt 238  Q
    |||| ||||| ||||| |||||||||||  ||||| ||||||||||||||||||||||||||||    
T  6382578 aagttatctcctgtaatcataatatcatttacatacacaaaaaatacaattagttttcctcctt 6382641  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 6404738 - 6404821
Alignment:
Q  132 ttttggcttttcccttaatgggtccttttataccctc-acagtcaagtaatctcatgtaaccataatatcatcaacataaacaa 214  Q
    ||||||| |||||||||||| ||||| |||||| ||| | ||| |||||||||| ||||||||||| ||| |||||||||||||    
T  6404738 ttttggcctttcccttaatgtgtcctattatactctctagagtgaagtaatctcttgtaaccataacatcttcaacataaacaa 6404821  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 6428490 - 6428553
Alignment:
Q  57 tgatttggtggcttgcaacaaggaacactcaggttaaaatatttctttatttttcattaacttt 120  Q
    ||||| ||||||||  | ||||||| | |||||||||||||||||||| |||||||||||||||    
T  6428490 tgattgggtggcttttagcaaggaaaattcaggttaaaatatttctttctttttcattaacttt 6428553  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 6415889 - 6415947
Alignment:
Q  56 atgatttggtggcttgcaacaaggaacactcaggttaaaatatttctttatttttcatt 114  Q
    |||||||||||||||| ||||| ||||||||||||||||| | ||| || |||||||||    
T  6415889 atgatttggtggcttgtaacaaagaacactcaggttaaaaaaattccttctttttcatt 6415947  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 6349284 - 6349341
Alignment:
Q  63 ggtggcttgcaacaaggaacactcaggttaaaatatttctttatttttcattaacttt 120  Q
    |||| |||| |||||| ||||| ||||||||||||||||||| |||| ||||||||||    
T  6349284 ggtgacttgtaacaagcaacacccaggttaaaatatttctttcttttccattaacttt 6349341  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 6400024 - 6400134
Alignment:
Q  126 tcttgattttggcttttcccttaatgggtccttttata--ccctcacagtcaagtaatctcatgtaaccataatatcatcaacataaacaaaaaatacaa 223  Q
    |||| |||||||| |||||||||||| ||||| ||| |  | ||| ||||||||||||||| ||| ||||||||||  |||||||||||   || |||||    
T  6400024 tctttattttggcatttcccttaatgtgtcctattagagtctctctcagtcaagtaatctcctgtgaccataatat-ttcaacataaac---aagtacaa 6400119  T
Q  224 ttagttttcctcctt 238  Q
    ||||||||| |||||    
T  6400120 ttagttttcatcctt 6400134  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 6359668 - 6359732
Alignment:
Q  57 tgatttggtggcttgcaacaaggaacactcaggttaaaatatttctttatttttcattaactttaacta 125  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||    |||||||||| ||||| ||||    
T  6359668 tgattgggtggcttgtaacaaggaaaactcaggttaaaatattt----atttttcatttacttttacta 6359732  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 28001685 - 28001739
Alignment:
Q  180 atctcatgtaaccataatatcatcaacataaacaaaaaatacaattagttttcct 234  Q
    |||||||||||| | ||||||||||||||||||||||| || |||||||||||||    
T  28001685 atctcatgtaacaacaatatcatcaacataaacaaaaagtataattagttttcct 28001739  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 28052917 - 28052955
Alignment:
Q  193 ataatatcatcaacataaacaaaaaatacaattagtttt 231  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  28052917 ataatatcatcaacataaacaaaaagttcaattagtttt 28052955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 28063342 - 28063380
Alignment:
Q  193 ataatatcatcaacataaacaaaaaatacaattagtttt 231  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  28063342 ataatatcatcaacataaacaaaaagttcaattagtttt 28063380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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